Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq69 125 1e-23 seq2 120 4e-22 seq874 113 6e-20 >seq69 Length=847923 Score = 125 bits (138), Expect = 1e-23 Identities = 387/594 (65%), Gaps = 6/594 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| ||||| || || || | ||| || |||| | || || ||||| || || || || Sbjct 357031 GCACGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAG 356972 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 ||| ||||| || || || || || ||||| || || | |||| ||| | || || |||| Sbjct 356971 TCCCGGCATGAGCCCGCGTTTCTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGA 356913 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATG 39792 |||||||||| || || || || || | | ||| || || || | ||| | Sbjct 356912 AGATGCCTTCGACGCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGGGATCCGTCG- 356854 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| || ||||| | || |||||| || ||||| || ||||| || || Sbjct 356853 -ATCCACGTCATCGCCCACTGCGCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCG 356795 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| |||| | | | || | | || || | || || || | | ||||| ||||| Sbjct 356794 AAACAGATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACAT 356735 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||||||||| || ||||| ||||| || ||||| ||| | || || | | Sbjct 356734 CTCGGAATGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGAC 356675 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| || || || |||| || | ||| || || ||||| || ||||| Sbjct 356674 TTGAACATCGGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGC 356615 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 || || || | || ||||| || || | || || | | || | |||||| Sbjct 356614 GAAGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTC 356555 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 || | |||| ||| ||||| || || ||||||||||| || || ||||| || Sbjct 356554 GCGACCGTCCTGAGATAGATCGACTTCCTCCGCCGTCCAAAACGATGCTTCGGCCTTCTT 356495 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||| | ||| || | | || || || || || ||| ||||| | ||| Sbjct 356494 GTACATCTCCCAGATCTGTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGG 356441 >seq2 Length=2373158 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | || ||| |||| |||||| Sbjct 1333101 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACC 1333160 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| |||| || || || ||| || Sbjct 1333161 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 1333220 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || || || ||| ||| ||| | |||||| ||||||||| |||||||| Sbjct 1333221 AACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATAT 1333280 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||||| ||||||||||| |||| Sbjct 1333281 TCCCTCGATGCTATCATCCTTCAT 1333304 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| ||||||| || |||||| ||||| | | |||||||||| || ||| Sbjct 1331262 AAGACTCTACGACTGTAAATGTTTGAGGTATACGGTTCGAAACATTCATTATTCCCAAGA 1331321 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | ||||| Sbjct 1331322 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATACCATTC 1331381 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || |||| | ||| ||| ||||| | || || || | |||||||| Sbjct 1331382 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATTACATTCCAC 1331441 Query 68914 AGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 1331442 ATATCAGGTTGAAGAATTCC 1331461 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||| || | ||||||||||| |||||||||||| | ||| | || || Sbjct 1333428 AGTTCCGGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 1333487 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| ||||| || || || || || || || || || || | | || | ||||| Sbjct 1333488 GTAAGTTTCGATTGCGGACTCAATGTCTTCCTTGTGGATGCCGACAGAAACCCTCATCAG 1333547 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || ||| || | ||| || ||||||||| | || || Sbjct 1333548 CATGTGTTGAGGCCTTTCAACTACTTTTCCATGGACTTTTAAGAGGTATGATCTCTCAAG 1333607 Query 70170 AGTTTTAAACCCAAAATAGT 70189 |||||| |||||||| |||| Sbjct 1333608 AGTTTTGAACCCAAAGTAGT 1333627 >seq874 Length=86422 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | ||| | ||||| | || | || | ||||||||||| |||||| Sbjct 39454 TCCTCCTTGGTCAACGTAACGAGCAGTATCGTTGAATACACGCAGCATCGGAACAATACC 39513 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | || || || ||| || ||||| || |||| || |||||| || || Sbjct 39514 ATTCGACGTTCCGTTCGTGCCACGGATGTAACTCCCAGTTGCACGGATATTATGAACCGA 39573 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| || || || || ||| |||| |||||| ||||| ||| || ||||| Sbjct 39574 AAGACCAATACCCCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGTGTTTCGTATAT 39633 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| || |||||||||||| ||||| | ||||| ||||| Sbjct 39634 ACCTTCAATGCTATCATCTTTCATGCAGATCAGAAAGCAGCT 39675 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | ||||| || || |||||||||||| | | || | || || | Sbjct 39780 GTTCCTGCATTGAAGAGAGTAGGGGAAGCATGAGTGAACCATCTCTGCGACATCAAATGG 39839 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || | || || || || || || || || || || | ||||| | ||||| | Sbjct 39840 TAAGTCTTGATTGCGGAATCAATGTCGTCCTTGTGGATGCCAACAGCGACCCTCATCAGC 39899 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | |||||| ||||| || | |||||| Sbjct 39900 ATGTGTTGAGGCCTTTCGACAACTTTCCCTTGGACTTTCAAGAGGTACGACCTCTCCAGA 39959 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||||||||| || | |||| ||| || | ||||| || || Sbjct 39960 GTTTTAAACCCAAAGTAATCGTATTCAAAATCACGGTCGTAGATGAT 40006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686850687515520