Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq522 134 2e-26 seq109 131 2e-25 seq418 105 8e-18 seq146 96.9 4e-15 seq69 89.7 6e-13 seq874 82.4 1e-10 >seq522 Length=218374 Score = 134 bits (148), Expect = 2e-26 Identities = 200/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||| |||||||| ||| || Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCCT-- 161934 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | |||| | ||||| || ||||||||||| ||||| ||||| Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCA--AAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || ||| || ||||| | || || |||||||||| Sbjct 161873 CAAGGAGC--TTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||||||||| | || || | ||| || ||| || || || ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| ||| | ||||||||| |||||||| || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 >seq109 Length=331296 Score = 131 bits (144), Expect = 2e-25 Identities = 297/445 (67%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | || || || Sbjct 38362 CGGTCAAAACGTCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCCCTGTTGGTTGCA 38303 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || |||||| | | ||||| ||||||||||| || || | ||||| Sbjct 38302 GCAACTACGATAACGCCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTC 38243 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | ||| |||||||| |||||||| || | | | || | | | |||| | || | Sbjct 38242 AGTGTCTGTTCTCTTTCATCATTACCT--CCACCGATTCCGGTTCCTCTTTGCCTACCAA 38185 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | ||||| || ||||||| || ||||| || || ||| || ||| ||| || | Sbjct 38184 CAGCATCTATTTCATCAACAAACACAATGCAAGGAGCATTCTCCTTGGCCTTTTTGAAAA 38125 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 | ||||| |||||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 38124 GGTCGCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAGA 38065 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | | ||| || ||| | |||||| || |||||| || | || || || || | Sbjct 38064 TCGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAACAGCGTTTTCCCAG 38005 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||| | || || | ||| |||||| |||||| || | | Sbjct 38004 TACCGGGAGGACCAACAAGGAGAACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 37945 Query 11868 TCTCGGGTTGCTTGAGAAAATCCAC 11892 |||| || | ||| ||||| ||||| Sbjct 37944 TCTCAGGCTTCTTCAGAAACTCCAC 37920 >seq418 Length=246988 Score = 105 bits (116), Expect = 8e-18 Identities = 272/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| || | ||| ||||| | | ||||| Sbjct 168287 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCAAAT 168346 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| ||||| | ||||||| || |||||||| |||||||| || | Sbjct 168347 CCATCCATCTCAGTGAGCAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---CCA 168403 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 168404 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCCACAAAGACAATGCAA 168463 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || || | | || ||||| || || || ||||| ||||| ||| Sbjct 168464 GGAGCGTTCTCTTTAGCTTTCTTGAAAAGATCACGGACTCTCGATGCACCAACACCCACA 168523 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | | ||| || ||| || ||| | |||||| || Sbjct 168524 AACATCTCAACAAACTCAGAACCGGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 168583 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 ||||| || | || || || |||||||| || ||| ||| || | ||| Sbjct 168584 ATGGCCTTCGCCAAAAGAGTTTTCCCCGTACCAGGAGGACCAATGAGGAGAACACCTTTC 168643 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||||| | |||||| || | ||||| || | ||| ||||| ||||| Sbjct 168644 GGGATCCTTGCACCAACCGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCCAC 168696 >seq146 Length=264749 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || | ||| || ||||| || || ||||| | ||| Sbjct 121004 GTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACC 121063 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||||| ||| |||| | |||||| ||||||||||||||||| || || || Sbjct 121064 TCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCA 121123 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | ||||| |||||| |||| | | || | ||||||||| || Sbjct 121124 AGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGA---TCCGTCGATCCATTTCATCGC 121180 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| |||| | ||| | | || || | |||| ||| || Sbjct 121181 CCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGC 121222 >seq69 Length=847923 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | || || |||||| ||| || |||||||| || || ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||| |||| | |||||| |||||||||||||| || || || || || || Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | || || ||||| | | || | | || | ||| |||| ||||| | | Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGA---TCCGTCGATCCACGTCATCGCCCACTGC 356833 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||||||| | | || || | |||| ||| || Sbjct 356832 GCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGC 356798 >seq874 Length=86422 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| || ||||||||||| || || | || ||| ||||| | || Sbjct 39767 CTGAGGCCTTGGTGTTCCTGCATTGAAGAGAGTAGGGGAAGCATGAGTGAACCATCTCTG 39826 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | ||| |||| | | ||||||||||| ||| ||||||||| | || Sbjct 39827 CGACATCAAATGGTAAGTCTTGATTGCGGAATCAATGTCGTCCTTGTGGATGCCAACAGC 39886 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTC 112089 ||||| ||| | ||||| || || |||| Sbjct 39887 GACCCTCATCAGCATGTGTTGAGGCCTTTC 39916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627978868492800