Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq69 134 2e-26 seq146 109 7e-19 seq522 98.7 1e-15 seq1839 89.7 6e-13 >seq69 Length=847923 Score = 134 bits (148), Expect = 2e-26 Identities = 384/580 (66%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | || || |||||| || || |||||||| || || ||| Sbjct 357009 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCATGAGCCCGCGTTTC 356950 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| ||||||||||| || || || ||||||||||| || || || || ||||| Sbjct 356949 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTTCGACGCAGGCGAAG 356890 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || |||||| || || | |||| | || | |||| |||||||||||||| Sbjct 356889 GCGACGATACGCTCCGCGAAAGTCTGGGA---TCCGTCGATCCACGTCATCGCCCACTGC 356833 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTCTGA 130272 ||||| ||| ||| || |||| ||| | ||| || ||| || | | ||| | || Sbjct 356832 GCCTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGAAACAGATGGTCTCTCTCCTTG 356773 Query 130273 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTTCATT 130332 | | || |||||||| | || | ||| || | ||| ||||| | || | Sbjct 356772 TTG-TCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAATGGATGTTCTCGAT 356714 Query 130333 ATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTG-CA-AAA 130390 | ||| || ||||||||| ||||| || | || | |||| | || || Sbjct 356713 CGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGAA---CATCGGACATGAA 356657 Query 130391 TTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 130449 | | | || |||||| | ||| ||||| || || | || || || || |||| | Sbjct 356656 TCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGGCGAGGACGTG 356597 Query 130450 CTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCCTTCGAGAG 130509 || ||||| | | | || ||||| || ||| ||||||| | |||| || || Sbjct 356596 TTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTCGCGACCGTCCTGAGATAG 356537 Query 130510 ATCTACCTCCTCCGCAGTCC-AATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAGAGGT 130568 ||| || |||||||| |||| || | | || | |||||||| || | ||||||| | Sbjct 356536 ATCGACTTCCTCCGCCGTCCAAAACGATGCTTCG-GCCTTCTTGTACATCTCCCAGATCT 356478 Query 130569 GGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 130608 | || || | | ||||||| ||||||| | |||| Sbjct 356477 GTGGGTAGTGAATCGGGAACATACAGAATCTGTCTGGGGT 356438 >seq146 Length=264749 Score = 109 bits (120), Expect = 7e-19 Identities = 188/269 (70%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || ||||| || ||||| | ||| || ||||| || || ||||| | ||| Sbjct 121004 GTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCCAGGCATTAAACC 121063 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||||| ||||||||||| || || || ||||||||||| || || || || Sbjct 121064 TCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCA 121123 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | || ||| ||||| ||| | || | || | ||| |||||||| Sbjct 121124 AGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGA---TCCGTCGATCCATTTCATCGC 121180 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT 130265 ||| ||||| ||||| ||| || || | ||| | ||| || ||||| | | ||| Sbjct 121181 CCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGGAAGAGATGATCTCT 121240 Query 130266 -TTTCTGATGGATCTTTGATGTACTTATC 130293 | | || || ||||||||||| |||| Sbjct 121241 CTCTTTGTTG--TCTTTGATGTAGGTATC 121267 >seq522 Length=218374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || || ||||| | ||||| || | Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCC--T 161934 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | |||| | || || |||||||| |||||||||||||| || Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 14270 CATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || |||| | | || || || | ||| | ||||| ||||| |||| Sbjct 161873 CAAGG--AGCTTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||| | ||||||||| | | || | ||| || ||| || || | ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || | |||| ||| | ||||||||| ||||| || || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 >seq1839 Length=44291 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| | || || | || || |||||| ||| || |||||||| | || ||| Sbjct 37020 CCTTCGTCTTGAGATATCAATTTGTTGGAGAAGGCCAGTCCCGGCATGAGTCTGCGTTTC 36961 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||||||||||| || || || ||||||||||| || || | || || || Sbjct 36960 TTCAACCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGATGCAGGCAAAA 36901 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 | | || |||||| || | | || | | || | |||| || |||| |||||| Sbjct 36900 ACGACGATACGCTCCGCGGAAATCTGAGA---TCTGTCGATCCACGTCTTCGCGCACTGC 36844 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| ||| ||| || |||| ||| | ||| || Sbjct 36843 GCCTTCTTCGTGATGCAAGGGATGGTTTTGATTGC 36809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618382880382080