Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq522 129 7e-25 seq418 120 4e-22 seq69 118 1e-21 seq146 105 8e-18 seq559 84.2 3e-11 >seq522 Length=218374 Score = 129 bits (142), Expect = 7e-25 Identities = 199/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || ||||| || ||||||| ||||| || || Sbjct 161991 AAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGTTCCCTCTCATCGTTTCCT-- 161934 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | |||| ||||||| || ||||||||||| ||||| || ||| Sbjct 161933 CCTCCCATCCCAGCTCCTCTTTGCCTTCCCACAGCGTCAATCTCATCGATGAAAACAATG 161874 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || |||||| || |||| || ||||||| || | || ||||||| Sbjct 161873 CAAGGAGC--TTTCGCCTTCGCCTTCTCGAACAGATCCCTGACTCTAGACGCACCCACAC 161816 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 ||||||| | ||||||||| | || || | ||| || ||| || || | ||| | Sbjct 161815 CAACAAAAAGCTCCACAAACTCTGAAGCCGCGCATGAGAAGAACGGCACTCCTGCTTCTC 161756 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | |||| ||| | || |||||||||||||| || Sbjct 161755 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 161716 >seq418 Length=246988 Score = 120 bits (132), Expect = 4e-22 Identities = 283/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | |||||| || | | ||||| Sbjct 168287 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAATACCAGTGTTACCTTCAAAT 168346 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 168347 CCATCCATCTCAGTGAGCAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---CCA 168403 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || ||||| || ||||| | ||||| ||||| Sbjct 168404 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCCACAAAGACAATGCAA 168463 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || || || ||| ||| ||| ||||| || || | | || || ||||| || Sbjct 168464 GGAGCGTTCTCTTTAGCTTTCTTGAAA-AGATCACGGACTCTCGATGCACCAACACCCAC 168522 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| | Sbjct 168523 AAACATCTCAACAAACTCAGAACCGG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 168581 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 ||||||| || | |||||| || |||||||| || ||| |||||| ||||| Sbjct 168582 CAATGGCCTTCGCCAAAAGAGTTTTCCCCGTACCAGGAGGACCAATGAGGAGAACACCTT 168641 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| | || ||| || | | ||||| || | ||| ||||| ||||| | || Sbjct 168642 TCGGGATCCTTGCACCAACCGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCCACGACTT 168701 Query 9972 C 9972 | Sbjct 168702 C 168702 >seq69 Length=847923 Score = 118 bits (130), Expect = 1e-21 Identities = 374/572 (65%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429 ||||||| | ||||||| | | || ||||| ||||||| | || |||||||| Sbjct 356445 ACAGATTCTGTATGTTCCCGATTCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCG 356504 Query 94430 AA--ATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAA 94487 || || | |||||| || || || || ||||| || |||| ||| ||| | Sbjct 356505 AAGCATCGTT--TTGGACGGCGGAGGAAGTCGATCTATCTCAGGACGGTCGCGACTGGGA 356562 Query 94488 GACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATC 94547 || ||| || || || | | ||||| ||| || |||| || ||||| || | || Sbjct 356563 GAATCTCAACGACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTC 356622 Query 94548 CGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCTG 94606 || ||||| ||| | |||||| || | | || || || || ||| ||| | Sbjct 356623 AGACGGAATCGTTCTGGAGAATCTCGCTT-CTCGATTCATGTCCGATGTTCAAGTCTCGG 356681 Query 94607 AAGCGAGATCCTTCTATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACATAC 94665 | ||| | | ||||| | || ||| || || || | | ||| |||| ||| Sbjct 356682 AGGCGCGTGCTTTCTACGGGTTCCAGA-TCGCGATCGAGAACATCCATTCCGAGATGTAC 356740 Query 94666 AGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCC 94725 ||| ||| | |||| || || ||||| |||| | || || ||| || Sbjct 356741 AGTCTCCTCCTCGACACTTACATCAAGGACAACAAGGAGAGAGACCATCTGTTTCGCGCA 356800 Query 94726 ATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA 94785 ||| |||| | || || | ||||| ||| | ||||| |||| |||| | || | Sbjct 356801 ATCGAAACCATCCCTTGCGTCGCGAAGAAGGCGCAGTGGGCGATGACGTGGATCGACGGA 356860 Query 94786 AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 || | | || || ||||| || |||| || || || || || || ||||||||| Sbjct 356861 ---TCCCAGACTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAAGGCATCTTCTTC 356917 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || ||| ||||||| | |||| ||||| ||||| || || |||||||| || || | Sbjct 356918 TCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATGCCGGGACTAACC 356977 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||||| | |||||||| ||||| || Sbjct 356978 TTCTCCAACGAGTTGATCTCTCGAGACGAAGG 357009 >seq146 Length=264749 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| ||||| || || | || || || || || || |||||||||||||| ||| ||| Sbjct 121151 CTTCGCTGAACGTATCGTGGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTT 121092 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | |||| ||||| ||||| |||||| | ||||| || ||| ||||||||||| Sbjct 121091 CTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGCTCACTTTCTCCAACGA 121032 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || ||||| || || ||| Sbjct 121031 ATTGATCTCGCGAGACGAAGGCCTTCAC 121004 >seq559 Length=133630 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 |||| || |||||||||||||| ||| ||||||| | |||| ||||| ||||| || Sbjct 23860 GTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCA 23919 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 | |||||| | || | ||| ||||||||| | |||||||| ||||| Sbjct 23920 GACTCATGTCGGGACCGGCCTTTTCCAACGAGTTGATCTCTCGAGACGA 23968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583211456136320