Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1846 84.2 2e-11 >seq1846 Length=39165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 |||||| ||| ||||| ||||| || ||| |||||| || || | ||| | | | | Sbjct 5991 TGATTTCGATACACATGAGCATCCCCAATAACATGGATAAAATCGCCAGGAACAAGATCG 5932 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 | || || | |||| | || || ||| ||| |||||||||||| |||||||| Sbjct 5931 CACACATGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 5872 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 |||||||| || | || | |||||| | |||||||| || | || || |||||| Sbjct 5871 AGGCCCATGTCAGCTGAACGTTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAG 5812 Query 111901 AATTGACAAAG 111911 || || |||| Sbjct 5811 AACTGCAAAAG 5801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391913270367184