Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq146 122 1e-22 seq69 120 3e-22 >seq146 Length=264749 Score = 122 bits (134), Expect = 1e-22 Identities = 304/451 (67%), Gaps = 18/451 (4%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||||||| | ||| ||| ||||| ||||| || |||||||| || ||| ||||| | Sbjct 121446 ACGACGAACGGCACTTCGTCAAGCACGTCCTCGCTTTCTTCGCCGCATCTGACGGAATCG 121387 Query 59737 TGATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGT 59793 | |||| ||| || | | | | ||| ||||| || | ||||||| || Sbjct 121386 TTCTGGAGAATCTATCTTCCCGGTTCATGTCC---GATGTTCAAGTCTCCGAGGCTCGTG 121330 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | ||||||| | ||| ||| | |||| ||| |||||||||| |||| ||| | Sbjct 121329 CCTTCTACGGATTCCAGATCGCG-ATCGAGAATATTCACTCCGAGATGTACAGTCTCCTT 121271 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 |||||| | |||| || |||||| | | ||| ||||| || || || || Sbjct 121270 CTCGATACCTACATCAAAGACAACAAAGAGAGAGATCATCTCTTCCGCGCAATCGAAACC 121211 Query 59913 -TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATC 59971 | ||| || || ||| || |||||| ||| | ||||| | | ||| | || Sbjct 121210 ATTCCCTGC-GTCGCGAAAATGGCGCGATGGGCGATGAAATGGATC-GAC--GGATC-TC 121156 Query 59972 A----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 | || || ||||| || | ||||| || ||||| ||||| ||||||||||| || Sbjct 121155 AGAGCTTCGCTGAACGTATCGTGGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGTA 121096 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCA 60087 ||||| | ||||||||||| || || || || | ||||| || || | |||||||| Sbjct 121095 GCTTCTGCTCGATTTTCTGGCTGAAGAAACGAGGTTTAATGCCTGGGCTCACTTTCTCCA 121036 Query 60088 ACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| |||| || || ||||| ||||| || Sbjct 121035 ACGAATTGATCTCGCGAGACGAAGGCCTTCA 121005 >seq69 Length=847923 Score = 120 bits (132), Expect = 3e-22 Identities = 311/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 || ||||| || ||||| ||| ||||| ||| |||||||| ||||| ||||||||| Sbjct 356555 GACTGGGAGAATCTCAACGACGGCGAGCGGCACTTCATCAAACACGTCCTCGCCTTCTTC 356614 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGA--CATGAA-CTTTTCCAAGGATGTC 59774 || || || ||||| || |||| ||| | | | || | | ||| ||||| Sbjct 356615 GCCGCCTCAGACGGAATCGTTCTGGAGAATCTCGCTTCTCGATTCATGTCC---GATGTT 356671 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 || | | ||||| || | ||||||| || ||| ||| | |||| ||||| || Sbjct 356672 CAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCG-ATCGAGAACATCCATTC 356730 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 ||||| |||| ||| | |||| | | ||||||| | |||| | ||| Sbjct 356731 CGAGATGTACAGTCTCCTCCTCGACACTTACATCAAGGACAACAAGGAGAGAGACCATCT 356790 Query 59894 GTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||| || || || || || |||| || || | || || | ||||| ||| || Sbjct 356791 GTTTCGCGCAATCGAAACCATCCCTTGC-GTCGCGAAGAAGGCGCAGTGGGCGATGACGT 356849 Query 59953 GGAT----GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 |||| | ||| || | || || | ||| || | || || || ||||| ||| Sbjct 356850 GGATCGACGGATCCCAGA----CTTTCGCGGAGCGTATCGTCGCCTTCGCCTGCGTCGAA 356905 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || ||||||||||| || ||||| | ||||||||||| || || || || |||||| Sbjct 356906 GGCATCTTCTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAGAAACGCGGGCTCATG 356965 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| || | |||||||||||| |||| || || ||||| ||| Sbjct 356966 CCGGGACTAACCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGC 357010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548478394801920