Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq69 131 2e-25 seq45 93.3 5e-14 seq103 89.7 6e-13 seq35 89.7 6e-13 seq590 87.8 2e-12 seq55 87.8 2e-12 seq83 86.0 7e-12 seq3 86.0 7e-12 seq243 82.4 8e-11 >seq69 Length=847923 Score = 131 bits (144), Expect = 2e-25 Identities = 508/778 (65%), Gaps = 34/778 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| || ||||| || || ||||| || || || | | |||||| ||||||| Sbjct 357315 TAATCACCCACTCGCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATC 357256 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || || || || ||| ||||||| | |||| | ||||| | ||| || Sbjct 357255 CAATCAAACGGATTCGCCACACCGTACAC---CTTCCCGTACCCAAGCGCACCCAAAAGC 357199 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTC-TCCCGCATCCATGCCGATGAGTTT 74638 | |||||| ||||||| || ||||| |||| ||||| || || || | | Sbjct 357198 CTATCCGCAACAAATTCGATATACTGGCTCATCAGGTCCCGGTTC-ATCCCCACCAACGC 357140 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 ||| || || || ||| | |||||| ||||| | |||| || ||| ||| Sbjct 357139 GCAGGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGA 357080 Query 74699 GTGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGTCACGGCAA 74754 | | | || | || | ||| ||||| ||| ||| | | | |||| || Sbjct 357079 CTTCACGCGCTCCTCCGAGAG---CTTCGTCCTCAACAGAGTGTAGATGAGGCACGCGAA 357023 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | | | ||| ||||||| |||| ||||| || || || || | || || |||| Sbjct 357022 ATCGCAG-TGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAGTCCCGGCA 356964 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || || ||||||| ||| || || | |||||| ||| |||||||||||||| Sbjct 356963 TGAGCCCGCGTTTCTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATGCCTT 356904 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG--GTGCATCGGAAGTCATCCAAGT 74932 |||| || || |||||||| | || | |||||| | | ||| | | ||||| || Sbjct 356903 CGACGCAGGCGAAGGCGACGATACGCTCCGCGAAAGTCTGGGATCCGTCG--ATCCACGT 356846 Query 74933 CTGAGCCCATTCAGC--TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||| | || | |||| ||| ||||| || ||||| || | || | | Sbjct 356845 CATCGCCCACTGCGCCTTCTTCG--CGACGCAAGGGATGGTTTCGATTGCGCGAAACA-G 356789 Query 74991 CTTGCCT-TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 | | || |||| | | ||||||| | |||| | | || |||| |||| || Sbjct 356788 ATGGTCTCTCTCCTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGA 356729 Query 75050 ATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 ||| || |||| | ||| |||| || ||||||||| |||||||| | | || | Sbjct 356728 ATGGATGTTCTCGAT-CGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGAA 356670 Query 75109 CATCCTTTGAAA--AATTCA-TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 |||| || | ||| | ||| |||||||| ||||| ||||| |||||||||| Sbjct 356669 CATC---GGACATGAATCGAGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGA 356613 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 | || || || || |||||| ||||| ||||| |||| |||| || ||||| || Sbjct 356612 AGAAGGCGAGGACGTGTTTGATGAAGTGCCGCTCGCCGTCGTTGAGATTCTCCCAGTC 356555 >seq45 Length=496881 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 80601 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 80660 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 80661 TGAGCTACGAGAGCAA 80676 >seq103 Length=327606 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 139721 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 139662 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 139661 TGAGCTACGAGAGC 139648 >seq35 Length=551618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 391361 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 391420 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 391421 TGAGCTATGAAAGCAA 391436 >seq590 Length=139453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 51362 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 51303 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 51302 CTGAGCTATGAAAGC 51288 >seq55 Length=484983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 362330 AGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 362271 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 362270 CAACTGAGCTATGAAAGC 362253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 362480 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 362421 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 362420 TGAGCTATGAAAGC 362407 >seq83 Length=781663 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 777997 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 778056 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 778057 TGAGCTATGAAAGC 778070 >seq3 Length=1676586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 ||||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 887047 GACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 886988 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 886987 AACTGAGCTACGAGAGC 886971 >seq243 Length=188661 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 89111 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 89170 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 89171 CTGAGCTACGAGAGC 89185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547169705526400