Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq161 585 3e-162 seq352 291 1e-73 seq842 102 1e-16 >seq161 Length=278270 Score = 585 bits (648), Expect = 3e-162 Identities = 702/954 (74%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | ||||| || | | || || | | || Sbjct 90931 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTT 90872 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 90871 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 90812 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || ||||| || | | || | ||| | Sbjct 90811 CTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACCTCTGCAG 90752 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | || || ||||| ||||||||||| ||| | ||||| |||||||| |||| Sbjct 90751 CTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 90692 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 90691 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 90632 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || ||||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 90631 GTCGTGAATGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 90572 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || || | || |||||| | |||| ||| | ||||||||| || Sbjct 90571 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 90512 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 90511 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 90452 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 90451 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 90392 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | || |||||| | |||| || || | Sbjct 90391 GTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCA 90332 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 90331 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACA 90272 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 ||||||| || || ||||| ||||| || | |||||||| |||||| |||||| |||| Sbjct 90271 TTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 90212 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 90211 CCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 90152 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || |||| ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 90151 TAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 90092 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 90091 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 90032 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||| ||||| || ||||| ||||||| Sbjct 90031 TGGAAGTTATGCATGAACGTAATGCTCACAATTTCCCTCTAGACCTAGCTGCTG 89978 >seq352 Length=147189 Score = 291 bits (322), Expect = 1e-73 Identities = 355/485 (73%), Gaps = 17/485 (4%) Strand=Plus/Minus Query 176618 TATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTG 176677 ||||||| || |||||||||||||| ||||||||||| || ||| | || ||||| |||| Sbjct 89328 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 89269 Query 176678 TGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTA 176737 | ||||| || || || || || ||||| || | || |||| | | | | Sbjct 89268 TATTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCA 89209 Query 176738 GAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGA 176797 | || || || ||||| ||||| || | ||||||| |||||| ||||||||||| | Sbjct 89208 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAA 89149 Query 176798 CATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTT 176857 | ||||||||||||||||| || ||||| ||||| || | ||||||| || Sbjct 89148 CTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------TT 89098 Query 176858 TCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGT 176917 |||| || || | | | || |||||| | || || | || || || | || |||| Sbjct 89097 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGT 89038 Query 176918 TTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGT 176977 ||||||| | ||| || |||| ||||| |||||||| || |||||||| |||||||| | Sbjct 89037 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 88978 Query 176978 CTGTCTTAGACAACTCTGGTAAAGTG--ATTCCTACATGGGGAGATATCCTTAACCGTGC 177035 | || | || | || ||||| ||| ||| |||| ||||| |||||||||| Sbjct 88977 CAGTAGTTGATA------GTCAAGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 88924 Query 177036 AAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 ||| ||||||||||||||||||| || |||||||||||||||||||| || || || || Sbjct 88923 TAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGC 88864 Query 177096 TGCTG 177100 ||||| Sbjct 88863 TGCTG 88859 >seq842 Length=174314 Score = 102 bits (112), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177020 ATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACT 177079 |||| |||||||||| ||| ||||||||||||||||||| || |||||||||||||||| Sbjct 148254 ATATTATTAACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACT 148195 Query 177080 TCCCACTTGACCTTGCTGCTG 177100 |||| || || || ||||||| Sbjct 148194 TCCCTCTAGATCTAGCTGCTG 148174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603443344373760