Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq45 87.8 2e-12 >seq45 Length=496881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || |||||||| || |||| | |||| || ||||| || ||||| |||||| Sbjct 239086 AATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTCCTGATCTTAAGCTGATG 239145 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 || || || || ||||||| | ||| || ||||| || || ||||| ||||| || || Sbjct 239146 GCACTTCCTCCATGCCACATGTT-TGCACAGTTCTATGTTGCAAATGGCGAGCTTTCATG 239204 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 || | ||||| || || | || ||||| | || || |||||||||||||| || Sbjct 239205 TCAAATGTATCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTCAACATTGCCTCATA 239264 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742 | || || || | ||| ||||||| ||| || ||| |||| Sbjct 239265 TTCCCTTCTTACATGCATCCTCGCTCACGTC-TGTGGTACGTTC 239307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| || ||| ||||||| ||| | || || || | || |||||||||| Sbjct 239307 GAACGTACCACA-GACGTGAGCGAGGATGCATGTAAGAAGGGAATATGAGGCAATGTTGA 239249 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 |||| || || | ||||| || | || || ||||| | || || || ||||| |||| Sbjct 239248 ACGGTACACCAAGACCCATATCAGCTGACCGCTGATACATTTGACATGAAAGCTCGCCAT 239189 Query 6723 TCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCC 6781 | || || ||||| || ||| | ||||||| || || || |||||||| ||||| Sbjct 239188 TTGCAACATAGAACTGTGCA-AACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCA 239130 Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 || ||||| || |||| | |||| || |||||||| || Sbjct 239129 GGAGGATTCCAAGCCGACATTATAATCCGTCGATCATCAGGATT 239086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224477000960