Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1846 91.5 1e-13 seq45 82.4 6e-11 >seq1846 Length=39165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| ||| ||||||||||||||||| ||| || || || ||||| ||| | Sbjct 5991 TGATTTCGATACACATGAGCATCCCCAATAACATGGATAAAATCGCCAGGAACAAGATCG 5932 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || ||||| | |||| | || | | | |||| || | ||||| || ||||| Sbjct 5931 CACACATGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 5872 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 || |||||||| ||||| | || |||| ||| || |||||||| || | ||| ||||| Sbjct 5871 AGGCCCATGTCAGCTGAACGTTGATACATTTGACATGAGAGCTCTCCTTCTGCCACATAG 5812 Query 118660 AACTG 118664 ||||| Sbjct 5811 AACTG 5807 >seq45 Length=496881 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 || || || ||||| |||||||| || ||||| | ||| |||| ||| || || ||||| Sbjct 239252 TTGAACGGTACACCAAGACCCATATCAGCTGACCGCTGATACATTTGACATGAAAGCTCG 239193 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||||||||| ||||| | ||||| |||||||| || |||| Sbjct 239192 CCATTTGCAACATAGAACTGTGCAAACATGTGGCATGGAGGAAGTGCCAT 239143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414442611881152