Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq252 98.7 7e-16 seq65 87.8 1e-12 seq187 84.2 2e-11 seq442 82.4 5e-11 >seq252 Length=291119 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || || ||||| || |||||| | || || || ||| | Sbjct 179315 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACGATTACACTCGAGGTGGAGAGCTCT 179256 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| || ||| || || ||||| |||| || Sbjct 179255 GAC-----ACAATCGATAATGTCAAGGCCAAGATACAGGATAAGGAAGGCATTCCTCCGG 179201 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || |||||||| || | || || | |||| ||| |||||| Sbjct 179200 ATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATT 179141 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| ||| | || ||||| |||||| ||||||| || Sbjct 179140 ACAACATTCAAAAGGAGTCGACTCTCCACTTGGTGTTGCGTCTGCGTGGTGG 179089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| ||| | || || || || || |||| ||||| ||| || Sbjct 179087 ATGCAGATTTTCGTGAAGACTTTAACCGGCAAGACGATCACCCTTGAAGTCGAGAGCTCC 179028 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || |||||| || || ||||| ||||| | || ||| | Sbjct 179027 GACACCATTGATAAC--GTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGACC 178970 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || | || || | |||| ||| ||||||||| Sbjct 178969 AGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATTACA 178910 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | || ||||| |||||| ||||||| || Sbjct 178909 ACATTCAGAAGGAGTCGACTCTTCACTTGGTGTTGCGTCTGCGTGGTGG 178861 >seq65 Length=625306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| ||||| ||||| || || |||| |||||| | Sbjct 413147 AAGATGCAGATCTTCGTGAAAACCCTTACGGGGAAGACCATAACCCTTGAGGTCGAATCC 413088 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || ||||| |||||| || || ||||| ||||| | ||| || Sbjct 413087 TCTGACACCATCGACAAT--GTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCGCCGG 413030 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | ||||| || || ||||| || || ||||| |||| |||| |||| ||| | |||| Sbjct 413029 ACCAGCAGCGATTGATTTTCGCGGGGAAACAGCTGGAAGACGGCCGCACGCTCG-CCGAC 412971 Query 27964 TACAACATCCAAAAAGAG 27981 ||||||||||| || ||| Sbjct 412970 TACAACATCCAGAAGGAG 412953 >seq187 Length=227058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || || |||||||| || || ||||| || || |||| ||||| | Sbjct 169908 AAAATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACAATCACCCTTGAGGTCGAGTCC 169849 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| ||||| || || ||||| ||||| | || || Sbjct 169848 TCCGACACCATCGACAAT--GTCAAGGCGAAGATCCAGGACAAGGAAGGAATCCCTCCGG 169791 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || ||||| ||||| || || | || |||| ||||| | | |||| | Sbjct 169790 ACCAGCAGCGATTGATTTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACT 169731 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||| || ||| || | || |||| | ||| | ||||| |||| Sbjct 169730 ACAACATCCAGAAGGAGTCGACGCTTCACCTGGTCCTCCGTCTCCGTGGTGGCG 169677 >seq442 Length=166222 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || || || || || || || | || ||||| ||| | Sbjct 81558 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATCACCTTGGAGGTCGAGAGCTCT 81617 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || || || || ||||| |||||| |||| || Sbjct 81618 GAC-----ACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGTATTCCTCCGG 81672 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || || ||||| || | || || | |||| ||| |||||| Sbjct 81673 ACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCCGATT 81732 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| ||| | || ||||| |||||| | ||||| ||| Sbjct 81733 ACAACATTCAGAAGGAGTCGACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGC 81785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355833046689936