Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq49 91.5 1e-13 seq70 87.8 2e-12 seq187 82.4 7e-11 seq65 82.4 7e-11 >seq49 Length=794425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | | ||||| || || || ||||| || ||||| ||||| ||| Sbjct 170696 CCTCCTCTCAACCTAAGAACCAAGTGCAGGGTTGATTCTTTCTGGATATTGTAATCTGCA 170755 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || |||||||| ||||| || || ||||| | ||||||||| | || Sbjct 170756 AGAGTTCGGCCATCTTCAAGCTGCTTGCCTGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 170815 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGA---CTC 39233 | | || |||||| ||| | | || |||| | | | || || ||| ||| Sbjct 170816 ATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACATTGTCGATAGTGTC---CGAGCTCTC 170871 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || || || |||||||||||||| ||||| Sbjct 170872 AACTTCTAGGGTGATGGTTTTGCCTGTAAGGGTTTTAACAAAGATCTGCAT 170922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || ||||| || | | ||||| || || || |||||| Sbjct 171135 TAACAAAAATTTG--CATACCACCTCTCAACCTAAGAACCAAGTGAAGGGTTGACTCTTT 171192 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| ||||| || || ||||| | || || |||||||| || ||||| || || Sbjct 171193 TTGGATATTGTAATCAGCCAGAGTTCGGCCATCCTCGAGCTGTTTACCGGCAAAGATGAG 171252 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCA 39217 | ||||||||||| || | | ||||| ||| ||| || |||| ||| | | | Sbjct 171253 CCTCTGCTGGTCGGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGA-CGTTGTCGA 171311 Query 39218 CCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 || || ||| || || || | || || | || || || || || ||||||| Sbjct 171312 TGGTGTCCGAGCT---TTCTACCTCGAGGGTTATCGTCTTGCCTGTAAGAGTCTTAACAA 171368 Query 39275 AGATTTGCATC 39285 |||| |||||| Sbjct 171369 AGATCTGCATC 171379 >seq70 Length=414679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||| || ||||| ||| || || || || || || || Sbjct 19320 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 19379 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || || | | |||| || ||||| || || || || || ||||||||||| | ||| ||| Sbjct 19380 AGAGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 19439 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || |||||| ||| ||| || | | | | |||||| ||| || || Sbjct 19440 ATCCCT-TCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTATCCGACGATTCAAC 19498 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||||||| Sbjct 19499 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 19550 >seq187 Length=227058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || ||||| ||| || || || || || ||||| || || ||| |||| || Sbjct 169697 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCG 169756 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || | ||||||||||| | || | | || |||||| | Sbjct 169757 AGCTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGG 169816 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| |||| | | | || ||| ||||| || || | ||||| | || Sbjct 169817 ATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATTGTCTTC 169876 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||||||| ||||| || ||||| ||||| ||| Sbjct 169877 CCCGTCAGGGTTTTCACGAAGATCTGCATTTTT 169909 >seq65 Length=625306 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| |||||| |||| || ||||| || || || || Sbjct 275771 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 275712 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | | |||||| ||| ||||| |||| | Sbjct 275711 GATGAGACGCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTGAATTTTGGCCTTGACGTT 275652 Query 39213 CGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | || || ||| |||||| || | ||||| | |||||||| || ||||| Sbjct 275651 ATCGATTGTGTCAGAGCT---CTCCACCTCGAGGGTGATCGTCTTTCCCGTTAGGGTTTT 275595 Query 39270 AACAAAGATTTGCAT 39284 || || |||||||| Sbjct 275594 GACGAATATTTGCAT 275580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429510168931184