Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq874 84.2 3e-11 >seq2 Length=2373158 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || | ||||||||||| |||||| Sbjct 1333102 CCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACCA 1333161 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||| ||||||||| ||| ||| ||||||||| |||| || || || ||| || Sbjct 1333162 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGAA 1333221 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || ||| || || | ||| || |||||||||||| || || Sbjct 1333222 ACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATATT 1333281 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||| || || |||||| |||| Sbjct 1333282 CCCTCGATGCTATCATCCTTCAT 1333304 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||||||| ||||||| || |||||| ||||| | | ||||||| || || | Sbjct 1331261 CAAGACTCTACGACTGTAAATGTTTGAGGTATACGGTTCGAAACATTCATTATTCCCAAG 1331320 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| || || |||||||||||||| |||||||| | | | |||||||| ||||| Sbjct 1331321 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATACCATT 1331380 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || || |||| | ||| ||| ||||| | || ||||| | |||| ||| Sbjct 1331381 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATTACATTCCA 1331440 Query 77321 AAGATCGTATTGTAGAATTCC 77341 | ||| ||| |||||||| Sbjct 1331441 CATATCAGGTTGAAGAATTCC 1331461 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | ||| || | || ||||||||||| || |||||| | ||| | | || Sbjct 1333428 AGTTCCGGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 1333487 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| ||||| || || || || ||||| | ||| || || || || | || | ||||| Sbjct 1333488 GTAAGTTTCGATTGCGGACTCAATGTCTTCCTTG-TGGATGCCGACAGAAACCCTCATCA 1333546 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || ||||| |||||||| || || | ||| || | ||||||| | || | Sbjct 1333547 GCATGTGTTGAGGCCTTTCAACTACTTTTCCATGGACTTTTAAGAGGTATGATCTCTCAA 1333606 Query 78577 AAGTTTTAAAACCAAAATAGT 78597 |||||| || ||||| |||| Sbjct 1333607 GAGTTTTGAACCCAAAGTAGT 1333627 >seq874 Length=86422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||| || ||||||| || |||||| || || | | |||| ||||| || | Sbjct 37631 CAAGACTCTGCGGCTGTAAATGTTTGAGGTATACGGCTCAAAACATTCGTTGTTACCAAG 37690 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||| ||| ||| ||||||||||||||||||||||| |||| Sbjct 37691 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCCACTAATA 37731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694610031019520