Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 132 7e-26 seq146 131 2e-25 seq874 89.7 7e-13 >seq2 Length=2373158 Score = 132 bits (146), Expect = 7e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | ||||||||||| ||| || Sbjct 1333102 CCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGCAACATTGGAACAATACCA 1333161 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| |||||||| ||| ||| ||||||||| |||||| || || ||| || Sbjct 1333162 TTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGAA 1333221 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| || || || ||| ||| ||| | |||||| ||||||||| ||||| || Sbjct 1333222 ACGCCAATACCCCCAGCCGATTTGCTGATAACAGCACATTCTTTCAATGTATCATATATT 1333281 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| || ||||||||| |||| Sbjct 1333282 CCCTCGATGCTATCATCCTTCAT 1333304 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| ||||||| || |||||| ||||| | | ||||||| || || | Sbjct 1331261 CAAGACTCTACGACTGTAAATGTTTGAGGTATACGGTTCGAAACATTCATTATTCCCAAG 1331320 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||| || ||||||||||| ||||| |||||||| | | | |||||||| ||||| Sbjct 1331321 AATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATACCATT 1331380 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || || |||| | ||| ||| ||||| | || || || | |||| ||| Sbjct 1331381 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCCGAAGGAATTACATTCCA 1331440 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 1331441 CATATCAGGTTGAAGAATTCC 1331461 >seq146 Length=264749 Score = 131 bits (144), Expect = 2e-25 Identities = 579/901 (64%), Gaps = 27/901 (3%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | |||||||| || |||||||| || | | || || Sbjct 120698 TTTCTGATACTCACCGACTCTCTTCTCGAAGAAGTTAGTTTTCCCCTGAAGCGAAATCAA 120757 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| |||||||||||||||| ||| || | || | || | | | Sbjct 120758 TTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGC---ACC 120814 Query 46458 CAGT---CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTAT 46514 |||| | ||| || |||||||| || ||| |||||| |||| ||||| || | Sbjct 120815 CAGTAACCGATCCGCCACGAATTCGATGTACTGACTCATCAAATCACGGTTCATCCCAAC 120874 Query 46515 GAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGATA 46573 | | || || || || | ||||||| || || ||| ||||| ||| | Sbjct 120875 CAACGCGCAAGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACCGCATCACGA-A 120933 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT--TAAACATTAAACA 46631 |||||| | ||| || || || | | | ||| || | | | || ||||| Sbjct 120934 CGATCGATTTCACTCGATCTTCGCT--GAGCTTCGATCGAAGGAGACTGTAGATCAAACA 120991 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 || ||||| || ||||||||||| |||| || |||||||| || || |||||||| Sbjct 120992 AGCGAAATCGCAGTGAAGGCCTTCGTCTCGCGAGATCAATTCGTTGGAGAAAGTGAGCCC 121051 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATA 46750 |||||||| || || || || ||||| || || | || ||| | || || ||||| | Sbjct 121052 AGGCATTAAACCTCGTTTCTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGA 121110 Query 46751 TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAAT 46808 | ||||| || ||||| || || | | || || | ||| ||| | || Sbjct 121111 TACCTTCGACGCAAGCGAAAGCCACGATACGTTCAGCGAAGCTCTGAGATC--CGTCGAT 121168 Query 46809 CCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||| ||| | ||||| ||| ||||| || || || || ||||| || || Sbjct 121169 CCA--TTTCATCGCCCATCGCGCCATTTTCGCGACGCAGGGAATGGTTTCGATTGCGCGG 121226 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| | | | || | | ||||| | || ||||| | | ||||| ||||| Sbjct 121227 AAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAGGTATCGAGAAGGAGACTGTACATC 121286 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || ||||| || || || || ||||| |||||||| || | || || | | Sbjct 121287 TCGGAGTGAATATTCTCGATCGCGATCTGGAATCCGTAGAAGGCACGAGCCTCGGAGACT 121346 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || || ||| | |||||| || ||||| ||| || || Sbjct 121347 TGAACATC-GGACATGAACCGGGAAGATAGATTCTCCAGAACGATTCCGTCAGATGCGGC 121405 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTCCA 47102 || || || | || || || | || | ||| ||| | || ||| | ||| Sbjct 121406 GAAGAAAGCGAGGACGTGCTTGACGAAGTGCCGTTCGTCGTCGTTTAGGGCTTTTTCCCA 121465 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 ||| | ||| | |||| ||| |||||||| || |||||||| || || || ||||| Sbjct 121466 GTCGCGGTAATCCTGAGATAGATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTT 121525 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 || ||||| | ||| || | | ||||||||||| || ||| |||| || |||| | Sbjct 121526 CTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCGATCTGGACT 121585 Query 47223 T 47223 | Sbjct 121586 T 121586 >seq874 Length=86422 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||||| || ||||||||||||||| | | || | | || | Sbjct 39780 GTTCCTGCATTGAAGAGAGTAGGGGAAGCATGAGTGAACCATCTCTGCGACATCAAATGG 39839 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || || | || | | || || || | ||| || || || |||||||| | ||||| Sbjct 39840 TAAGTCTTGATTGCGGAATCAATGTCGTCCTTG-TGGATGCCAACAGCGACCCTCATCAG 39898 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | | |||||| | ||| || | |||| Sbjct 39899 CATGTGTTGAGGCCTTTCGACAACTTTCCCTTGGACTTTCAAGAGGTACGACCTCTCCAG 39958 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||| ||||| || | |||| ||| || | ||||| || || Sbjct 39959 AGTTTTAAACCCAAAGTAATCGTATTCAAAATCACGGTCGTAGATGAT 40006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| || ||||||| || |||||| || || | | |||| ||||| || | Sbjct 37631 CAAGACTCTGCGGCTGTAAATGTTTGAGGTATACGGCTCAAAACATTCGTTGTTACCAAG 37690 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATA 75836 ||| ||| |||||||||||| |||||||||||||| |||| Sbjct 37691 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCCACTAATA 37731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712874085749760