Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq161 704 0.0 seq352 334 8e-87 seq2526 95.1 1e-14 seq438 89.7 6e-13 seq39 87.8 2e-12 seq842 82.4 9e-11 >seq161 Length=278270 Score = 704 bits (780), Expect = 0.0 Identities = 754/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | |||||| Sbjct 90905 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 90847 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || ||||| || |||| || || | || |||||||| Sbjct 90846 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 90787 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 || || || ||||| |||| ||| | ||| ||||| ||| |||| || ||||| || Sbjct 90786 TATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 90727 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| ||| | || |||||||| |||||||||||||||| |||| |||| Sbjct 90726 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 90667 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | |||| | | ||| ||||||||||| ||||||||| || ||| Sbjct 90666 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCG 90607 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 ||| |||||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 90606 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 90547 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| || |||| || | |||||||| ||| ||||||| |||||||| || || Sbjct 90546 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 90487 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| ||| | || |||||||||||||||||||| || |||||||| Sbjct 90486 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 90427 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | || ||||| ||||| || |||||||| || || ||||| ||||| || Sbjct 90426 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 90367 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| |||||| || || | || ||||| |||||||| || || | || Sbjct 90366 TTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 90307 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 ||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| Sbjct 90306 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGG 90247 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || |||| |||||||| ||| ||||||||||||||||| | || |||||| | || Sbjct 90246 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 90187 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| |||||||||||| | || ||||||| ||||| ||||| Sbjct 90186 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 90127 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 ||| || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 90126 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 90067 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 90066 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 90007 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920 |||||| |||||||| ||||| ||||||| |||| Sbjct 90006 TCACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 567 bits (628), Expect = 8e-157 Identities = 722/991 (73%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 122109 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTC 122168 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 122169 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 122228 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || |||||||||||||| || | Sbjct 122229 GCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 122288 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | || | || ||||||||||| | ||||| || || | || Sbjct 122289 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 122348 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||| ||||||| || |||||||| || || ||| | ||| Sbjct 122349 TGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 122408 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGC 165538 ||||| ||| | || || |||||||| || ||| || || | | || ||||| ||||| Sbjct 122409 GGTTTTATGTTACGTCAATTTGAACTTGCCCGATCTGTTCAAT-TGCGACCTTATAATGC 122467 Query 165539 TATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGG 165598 || || ||||||||||| |||||||| || ||| ||| || || || ||||| || || Sbjct 122468 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGG 122527 Query 165599 ACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCT 165658 ||||| |||||||| || || || || || || || || || |||||| | || Sbjct 122528 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCT 122587 Query 165659 CTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGG 165718 ||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || || Sbjct 122588 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCGTTTCATATGATGGGAGTCGCCGG 122647 Query 165719 TATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTA 165778 | | |||| || |||| | || |||||||||| ||| ||||| |||||||| | Sbjct 122648 CGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 122707 Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || ||| || ||| | ||||| | || ||||| Sbjct 122708 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 122767 Query 165839 TTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 165898 |||||| |||||||| |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 122768 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 122827 Query 165899 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 165958 ||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 122828 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGC 122887 Query 165959 TATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| | | ||||| || | || || ||||| ||||| || || || ||||| || Sbjct 122888 TCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 122947 Query 166019 TAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGA 166078 | || || || |||||||| ||||| || |||||||| ||||| || || | || || Sbjct 122948 CCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGA 123007 Query 166079 AGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGA 166138 ||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||||||| Sbjct 123008 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 123067 Query 166139 AGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | ||| | || ||||| |||||| Sbjct 123068 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 123098 >seq352 Length=147189 Score = 334 bits (370), Expect = 8e-87 Identities = 365/486 (75%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTG 164494 |||||||||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 164495 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGT 164554 |||||||| || || || ||||| ||||| ||||| |||| |||| | || | | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 164555 GAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACC 164614 || ||||| |||||||| || || | ||||||| || ||||| ||||||||||| Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 164615 TACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTC 164674 |||||||| || || ||||| ||||| ||||| || |||| |||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 164675 AACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTT 164734 ||||| || ||||| | || |||||| | || || ||||| || || ||||| |||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 164735 ACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 164794 |||||| | || ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 164795 ATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 164854 | | ||| |||| |||| | || || ||||| || || | ||||||||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 164855 CTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 164914 | || |||||||| ||||| || ||||||||||||||||||||||| || || |||||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 164915 GCTGAG 164920 | |||| Sbjct 88859 GTTGAG 88854 >seq2526 Length=25980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTG 164494 |||||||||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 164495 TTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 |||||||| || || || ||||| |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTG 164494 |||||||||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 164495 TTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 |||||||| || || || ||||| |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 >seq438 Length=150666 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/137 (77%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 164159 TACCCCATCTGGGAAGCAGCAAGTC-TGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 164217 ||||| ||||||||||| | || || | || |||||||| |||||||||||||||| | Sbjct 89508 TACCCGATCTGGGAAGCTG-AATTCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 89450 Query 164218 ACTCGTTGTGTTCCACTTCCTGATTG-GCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 ||| |||| | ||||| | ||| | | || || ||| ||||||||||| ||||||| Sbjct 89449 ACTAATTGTTCTACACTTTTTACTTGTGTAGCT-TG-TTATATGGGTCGTGAATGGGAAC 89392 Query 164277 TTTCTTACCGTCTTGGT 164293 || || |||||| ||| Sbjct 89391 TTAATTTCCGTCTGGGT 89375 >seq39 Length=611640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | || ||||| || |||||||| || | || | || Sbjct 484145 GTGCGAGGACGACGTCTACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATTTGCCTTA 484086 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| ||| ||||| || ||| ||||| |||||||| | || Sbjct 484085 CTCATGCCGTGCCGGGTCTTGCTCGAGCTGCGCCGGGAAAGTCGTCGCTGGCACCATTGA 484026 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694 ||| | |||||| |||| | ||||||||||| || Sbjct 484025 CCAGACGGACCAGAGCTTCTTAGACGATGACCAGAT 483990 >seq842 Length=174314 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 164843 AACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 164902 ||||||||| | || |||||||| ||||| || ||||||||||||||||||||||| Sbjct 148246 AACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 148187 Query 164903 GACCTTGCTGCTGCTGAG 164920 || || ||||||| |||| Sbjct 148186 GATCTAGCTGCTGTTGAG 148169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557607222437760