Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq442 89.7 4e-13 seq252 86.0 5e-12 >seq442 Length=166222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || ||||| ||||||||||| || ||||| || ||||| ||| | | Sbjct 81102 ATGCAAATCTTCGTCAAGACGTTGACCGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 81161 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | | || || ||||| ||||| ||||| |||| ||||| Sbjct 81162 GACACTATTGACAACGTGAAGGCTAAAATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 81221 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | || || || ||| | ||||| |||| |||| || || || Sbjct 81222 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTTTGGCTGACTACAAC 81281 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || |||||||| || || || |||||||| || ||||| Sbjct 81282 ATCCAGAAGGAGTCTACACTTCACTTGGTCTTGCGTCTCCGTGGTGG 81328 >seq252 Length=291119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || ||||| ||||||||||| || || || |||| ||| | Sbjct 179543 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAGACGATCACATTGGAGGTGGAGAGCTCG 179484 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || ||| || ||||| |||||| |||| ||||| Sbjct 179483 GACACGATTGACAACGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCGGATCAG 179424 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | || | || || || || | || || | ||| ||||||| || || Sbjct 179423 CAAAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGAACATTGGCCGACTACAAC 179364 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || |||||||| || || ||||||||||| || ||||| Sbjct 179363 ATTCAGAAGGAGTCTACACTTCACTTGGTGTTGCGTCTCCGTGGTGG 179317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421776406903168