Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq161 657 0.0 seq352 345 5e-90 seq2526 91.5 2e-13 seq842 89.7 6e-13 >seq161 Length=278270 Score = 657 bits (728), Expect = 0.0 Identities = 741/992 (75%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | || ||||| || | || ||||| ||||| || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717 ||||||||||| | | | || || | ||| || |||| ||| | ||||||||| Sbjct 90905 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 90846 Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 90845 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 90786 Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837 || ||||| ||||| || ||||| | ||| ||||||||| | || || || || ||| Sbjct 90785 ATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 90726 Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897 |||||||| || || | ||||| ||||| ||||| |||||||||| |||| || | Sbjct 90725 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 90666 Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957 | ||||| | | ||| | | || ||||||||||| ||||||||| || ||| Sbjct 90665 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGT 90606 Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017 || ||||||||||| ||||| ||| ||||| || ||||| || || || || ||||| Sbjct 90605 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 90546 Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077 || ||| | | || || | |||||||| ||| ||||| | |||||| || || ||| Sbjct 90545 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 90486 Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137 ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 90485 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 90426 Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197 || |||||||| || || |||||||| || || ||||| || || ||||| ||||| ||| Sbjct 90425 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 90366 Query 178198 TCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATGGT 178257 || |||| ||||| || || | |||||||| || || ||| | || | ||| Sbjct 90365 TCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 90306 Query 178258 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGT 178317 |||| ||||||||||||||||| || |||||||| || || ||||||||||| || || Sbjct 90305 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGC 90246 Query 178318 CGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCA 178377 || ||||||||||||| || ||||||||||||||||| | || |||||| | || Sbjct 90245 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCG 90186 Query 178378 GCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 178437 || ||||| || || ||||| ||||| |||||| | ||| ||||||| ||||| |||||| Sbjct 90185 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 90126 Query 178438 CTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACC 178497 || || |||||||| |||||||| || | | |||||||| || || | || || Sbjct 90125 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 90066 Query 178498 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCT 178557 ||||| || || | ||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 90065 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 90006 Query 178558 CACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589 ||||| |||||||| ||||| ||||||| ||| Sbjct 90005 CACAATTTCCCTCTAGACCTAGCTGCTGTTGA 89974 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 122082 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 122141 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || | || |||||| |||| || ||||| || Sbjct 122142 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 122201 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||||||| || | || ||| ||| | || || || ||||| | Sbjct 122202 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 122261 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| || || ||||||||| | | | | ||||| | | | || |||||| Sbjct 122262 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 122321 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || |||||| ||||||| Sbjct 122322 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 122381 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || |||||||| || ||||| | |||||||| ||| | || || |||||| | || || Sbjct 122382 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGA 122441 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 122442 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 122500 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || || || ||||| || || || || |||||||||||||| ||||| Sbjct 122501 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 122560 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || || || || || ||| | ||||| | || || || || || ||||| | || Sbjct 122561 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 122620 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 |||||| || |||||||| || || || | ||||||| || |||| || || ||||| Sbjct 122621 CCCGTTTCATATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 122680 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 122681 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 122740 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 122741 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 122800 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 122801 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 122860 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | ||||| || | ||||| | Sbjct 122861 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 122920 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || ||||| || || ||||| || Sbjct 122921 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 122980 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 |||||| || || || || || || |||||| | |||||||||||||| | ||||| Sbjct 122981 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 123040 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 123041 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 123094 >seq352 Length=147189 Score = 345 bits (382), Expect = 5e-90 Identities = 369/486 (76%), Gaps = 15/486 (3%) Strand=Plus/Minus Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||||| || ||||||||||| || |||||||| || |||||||| || || |||||||| Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-G 178223 ||||| || || || || ||||| ||||| ||||| |||| |||| | | | | || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTA-TAGTTTGATCAG 89208 Query 178224 TGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 178283 |||||||| || || ||| | || | ||||||| ||||||||||||||||| || Sbjct 89207 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 89148 Query 178284 CTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 178343 |||||||| || |||||||||||||| || || || ||||||||| || Sbjct 89147 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTT 89097 Query 178344 CAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 178403 |||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 89096 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 89037 Query 178404 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 178463 |||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89036 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 88977 Query 178464 CATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGG 178523 | | |||||||| | || | || || ||||| || || | ||||||||| Sbjct 88976 AGTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 88921 Query 178524 TCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGC 178583 ||||||||||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 88920 CTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGC 88861 Query 178584 TGCTGA 178589 || ||| Sbjct 88860 TGTTGA 88855 >seq2526 Length=25980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||||| || ||||||||||| || |||||||| || |||||||| || || |||||||| Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCAC 178194 ||||| || || || || ||||| |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 ||||| || ||||||||||| || |||||||| || |||||||| || || |||||||| Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCAC 178194 ||||| || || || || ||||| |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 >seq842 Length=174314 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTT 178572 ||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 148246 AACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 148187 Query 178573 GACCTCGCTGCTGCTGA 178589 || || ||||||| ||| Sbjct 148186 GATCTAGCTGCTGTTGA 148170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596256752410880