Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq161 628 3e-175 seq352 307 1e-78 seq768 116 4e-21 seq39 91.5 2e-13 seq842 87.8 2e-12 seq2526 86.0 7e-12 >seq161 Length=278270 Score = 628 bits (696), Expect = 3e-175 Identities = 735/993 (74%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| |||||| |||||||| || | || ||||| || || || Sbjct 90965 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 90906 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | ||| || ||||| ||||| | |||||| Sbjct 90905 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 90846 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 90845 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 90786 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || | || || || ||| | || || || || ||| Sbjct 90785 ATTATTTCAGGTGCCATTATTCCTACCTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 90726 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||| | |||||||||||||||| |||| |||| Sbjct 90725 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 90666 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | ||||| | | || | | ||| ||||||||||| |||||| | | ||| Sbjct 90665 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTTCCGT 90606 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 90605 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 90546 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || ||||||| |||| ||||| || ||||| | ||||||||| || ||| Sbjct 90545 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 90486 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| |||||||||||||| || |||||||| Sbjct 90485 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 90426 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || || ||||| || ||||| ||| Sbjct 90425 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 90366 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || ||||| ||| | | | |||||||| || || || || || | ||| Sbjct 90365 TCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 90306 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||||||||||||||| || |||||||| || |||||||| ||||| || || Sbjct 90305 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCCGCTCATGGTTATTTTGGC 90246 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| ||||||||||||||||| | || |||||| | || Sbjct 90245 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCG 90186 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| || || || || ||||| || ||| | ||| | ||| ||||| |||||| Sbjct 90185 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 90126 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 90125 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 90066 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 90065 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 90006 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGAG 170344 ||||| |||||||| ||||| ||||||| |||| Sbjct 90005 CACAATTTCCCTCTAGACCTAGCTGCTGTTGAG 89973 Score = 524 bits (580), Expect = 9e-144 Identities = 723/1009 (72%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 122092 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 122151 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 122152 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 122211 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| || || ||| | || ||||| || | |||||| ||||| | || || || | Sbjct 122212 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 122271 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 122272 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 122331 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 122332 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACG 122391 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || || || | |||||||| ||| | || || |||||| | || ||| || Sbjct 122392 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCCCGATCT-GTTCAA 122450 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | |||| || ||||||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 122451 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTC 122510 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || || || |||||||||| || ||| ||||| || || || Sbjct 122511 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 122570 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | ||||| | ||||| || || || |||||| |||| || |||||| Sbjct 122571 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCGTTTCAT 122630 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| || || || | || |||| || |||| | || |||||||||| ||| Sbjct 122631 ATGATGGGAGTCGCCGGCGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 122690 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 122691 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 122750 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | ||||| || ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 122751 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 122810 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 122811 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACT 122870 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| ||| || | | ||||| ||| | || || | || ||||| Sbjct 122871 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 122930 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| ||||| || | ||||| ||||||||||| || ||||| |||||||| || Sbjct 122931 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAA 122990 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || || || |||||| ||||||| |||||||| | ||| || || |||||| Sbjct 122991 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 123050 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 123051 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 123099 >seq352 Length=147189 Score = 307 bits (340), Expect = 1e-78 Identities = 359/486 (74%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 169859 TTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTG 169918 ||||| |||||||||||||| || |||||||| || |||||| | ||||| || || || Sbjct 89326 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 89267 Query 169919 TTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGT 169978 ||||| || || || ||||| || ||||| ||| | | || |||| ||| | || | Sbjct 89266 TTTGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTATAGTTTGATCAGG 89207 Query 169979 GAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 170038 |||||||| || || || || || | ||||||| ||||||||||||||||| || Sbjct 89206 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 89147 Query 170039 TACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 170098 |||||||| || || ||||| ||||| || || || ||||||||| ||| Sbjct 89146 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCC---------GTTTC 89096 Query 170099 AACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTC 170158 ||||| || ||||| | || |||||| | || || ||||| || || || || ||||| Sbjct 89095 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 89036 Query 170159 ACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCC 170218 || ||| | ||| | ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 89035 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCA 88976 Query 170219 ATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 170278 | | ||| |||| |||| | || || ||||| || || | ||||||||| Sbjct 88975 GTAGTTGATAGTCA----AGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 88920 Query 170279 CTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 |||| |||||||| ||||| || ||||||||||||||||||||||| || || |||||| Sbjct 88919 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCT 88860 Query 170339 GCTGAG 170344 | |||| Sbjct 88859 GTTGAG 88854 >seq768 Length=145301 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 171414 GGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAA 171473 ||||| ||| | || || | || ||||| ||||| ||||| | | ||||| ||| Sbjct 42072 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAACTTCGTGCAGCGGAA 42131 Query 171474 GATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCA 171533 ||| ||| || | || |||||||| || || || || || || |||||| |||||| Sbjct 42132 AATCTAGAATTTAAAACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGTT 42191 Query 171534 TGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCT 171593 |||||||| | ||| || || ||||||||| || | |||| |||||||||||||| Sbjct 42192 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCTTGAGGAAGTTCTACCA 42251 Query 171594 CGTGGCAATGCACTTTGAT 171612 ||||| || || |||| || Sbjct 42252 CGTGGAAACGCTCTTTAAT 42270 >seq39 Length=611640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| |||||||| |||||||| || | || | ||||| |||||||| || Sbjct 484129 TACGTCCTCGACGCGGCGGAGGAAGCCGGAATCGATTTGCCTTACTCATGCCGTGCCGGG 484070 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| ||| ||||| || ||| || || |||||||| | || || | || || | Sbjct 484069 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCGCTGGCACCATTGACCAGACGGACCAGAGC 484010 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACC 167627 ||| | |||||||| || || |||||| | ||||||||||||| | || || ||| Sbjct 484009 TTCTTAGACGATGACCAGATGAGCGAAGGGTATGTTCTCACCTGTGTCGCTTACCCGACC 483950 >seq842 Length=174314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 170267 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTC 170326 ||||||||| |||| |||||||| ||||| || ||||||||||||||||||||||| Sbjct 148246 AACCGTGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 148187 Query 170327 GACCTCGCTGCTGCTGAG 170344 || || ||||||| |||| Sbjct 148186 GATCTAGCTGCTGTTGAG 148169 >seq2526 Length=25980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169859 TTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTG 169918 ||||| |||||||||||||| || |||||||| || |||||| | ||||| || || || Sbjct 23945 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 23886 Query 169919 TTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 ||||| || || || ||||| || |||||| Sbjct 23885 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 23856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169859 TTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTG 169918 ||||| |||||||||||||| || |||||||| || |||||| | ||||| || || || Sbjct 24236 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 24177 Query 169919 TTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 ||||| || || || ||||| || |||||| Sbjct 24176 TTTGGCGGCTCCCTATTTAGTGCTATGCAC 24147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592148300015360