Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7 104 5e-17 seq5 102 2e-16 seq2 102 2e-16 seq4 100 6e-16 seq38711 98.7 2e-15 seq38686 98.7 2e-15 seq28181 98.7 2e-15 seq28078 98.7 2e-15 seq23410 98.7 2e-15 seq6 98.7 2e-15 seq3 98.7 2e-15 seq28226 89.7 1e-12 >seq7 Length=30551617 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 ||||||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 3859470 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3859529 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 3859530 AGCCCCACGGTGGGC 3859544 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 10663582 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 10663523 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 10663522 GCCCCACGGTGGGC 10663509 >seq5 Length=15272566 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 11009544 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11009485 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 11009484 GCCCCACGGTGGGC 11009471 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 8340425 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8340366 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 8340365 CCCCACGGTGGGC 8340353 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 9519246 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9519305 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 9519306 CCCCACGGTGGGC 9519318 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9191509 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9191450 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9191449 CCCACGGTGGGC 9191438 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11286407 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11286466 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11286467 CCCACGGTGGGC 11286478 >seq2 Length=32560536 Score = 102 bits (112), Expect = 2e-16 Identities = 334/508 (66%), Gaps = 16/508 (3%) Strand=Plus/Plus Query 230140 TGGGCTCAGAAATGGCTAGAACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTG 230199 |||||| ||||||| | || | | | || ||||| || | |||| || | | Sbjct 19587205 TGGGCTATGAAATGGATCGATTCATCTGATTCATTTGCTGAAAGAATCGTTGCTTTTGCT 19587264 Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259 |||||||||||||| | ||||| || ||||| || || || || ||||| || ||| Sbjct 19587265 TGTGTTGAAGGTATATTTTTTTCTGGAAGTTTTTGTGCAATTTTCTGGCTT---AAAAAA 19587321 Query 230260 GGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTC 230316 ||| | |||||||| | | | || |||||| | || || ||||| ||||| Sbjct 19587322 CGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGTCTT 19587381 Query 230317 CATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACC-ATTCGAGA 230374 ||| | |||| | | ||| | ||||| ||| || ||| || | | ||| Sbjct 19587382 CATTGTGATTTCG-CTTGTTTACTTTATTC---GCTTTTGAGAAAGAAACTTAGTGAAGA 19587437 Query 230375 -CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGC 230432 || || ||| || | || || ||||| | || | || || ||||||| || Sbjct 19587438 GCGTGTGAAAACTATTGTCCGTGATGCGGTTGAGATTGAGAGAGAATTTGTTTGTGAAGC 19587497 Query 230433 TATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCG 230491 |||| ||| || || |||| ||||||| |||| | ||| | ||||| || || || | Sbjct 19587498 GCTTCCTTGT-GCTTTGGTTGGAATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTG 19587556 Query 230492 TAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCT 230551 | || || | | || | || ||||||| | |||| | || || | |||| || | Sbjct 19587557 TTGCTGATAGGTTATTGGGTGAGCTTGGTTGTGGGAAAATTTATAATGTTCAGAATCCTT 19587616 Query 230552 TTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCA 230611 ||| | ||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 19587617 TTGATTGGATGGAATTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTG 19587676 Query 230612 GTGACTATCAGAGGCCTGGTGTGATGAA 230639 | || ||||||| || ||| ||||| Sbjct 19587677 GGGAGTATCAGAAAGCTTCTGTTATGAA 19587704 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 31121470 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 31121411 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 31121410 CCCACGGTGGGC 31121399 >seq4 Length=28907061 Score = 100 bits (110), Expect = 6e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 165697 ACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 ||| ||| | | |||||||||||||||| |||||||||| || || |||| || ||||| Sbjct 21078044 ACTAAAATCAATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGT 21077985 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||| ||||| Sbjct 21077984 CGTGGGTTCGAGCCCCACGGTGGGC 21077960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4217174 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4217233 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4217234 CCCACGGTGGGC 4217245 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 27783344 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27783285 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27783284 CCCACGGTGGGC 27783273 >seq38711 Length=45949 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18312 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18253 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18252 CCCACGGTGGGC 18241 >seq38686 Length=48611 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 41995 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42054 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42055 CCCACGGTGGGC 42066 >seq28181 Length=101328 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9787 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9846 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9847 CCCACGGTGGGC 9858 >seq28078 Length=136442 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 47756 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 47815 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 47816 CCCACGGTGGGC 47827 >seq23410 Length=814 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 571 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 630 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 631 CCCACGGTGGGC 642 >seq6 Length=22682783 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13893322 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13893263 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13893262 CCCACGGTGGGC 13893251 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 26692226 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26692167 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26692166 CCCACGGTGGGC 26692155 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| || || |||| || |||||||||||||||||||| Sbjct 10236081 CCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 10236140 Query 165772 CACGATGGGC 165781 || | ||||| Sbjct 10236141 CATGGTGGGC 10236150 >seq28226 Length=90112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGG 230453 || || ||||| | || | ||| || |||| || || |||| || ||| || |||| Sbjct 34856 GACGCGGTTGAGATTGAGAGGGAATTTGTTTGCGAAGCGCTTCCTTG-CGCTTTGGTTGG 34914 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT-TG 230512 ||||| | ||| | ||| | ||||| || || || || || || | || |||| || Sbjct 34915 AATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGG-TTGTTGTGTG 34973 Query 230513 CACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 ||||||| |||||| | || || | |||| || |||| | ||||| | |||| Sbjct 34974 AGCTTGGTTGTGAGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTT 35033 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTG 230632 ||||||| ||||| || ||||| || || ||||| || | || ||||||| || || Sbjct 35034 CGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGGGAATATCAGAAAGCTTCTG 35093 Query 230633 TGATGAA 230639 | ||||| Sbjct 35094 TTATGAA 35100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057294727348130