Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=32560536 Score = 105 bits (116), Expect = 7e-18 Identities = 417/645 (65%), Gaps = 11/645 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| || || |||||||||||||| |||| || || || ||| Sbjct 19587686 TGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAATTCC 19587627 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||||||||| | | | | ||||| | || || || | | ||| Sbjct 19587626 ATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAATAAC 19587567 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || ||||| || ||||| || | ||| ||||| | ||||||||| | | | | Sbjct 19587566 CTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCA-AAGC 19587508 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || ||||| ||||| | |||| | ||| || ||||||| || | |||| | Sbjct 19587507 ACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAATAGT 19587448 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 || || || || || | | | | | | | | | | | ||| |||||||| Sbjct 19587447 TTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGAAATC 19587388 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||||| | || ||||| | ||||| ||||| ||||| || || || ||||| Sbjct 19587387 ACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAA 19587328 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 || ||||| || | ||| || || || || |||||||| |||||||| || || Sbjct 19587327 ACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTCAAC 19587268 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | ||||| || | | || ||| || | | | || || ||||||||| Sbjct 19587267 ACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC--AGATGAATCG-ATCCATTTCAT 19587211 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTC 17214 |||| || ||||| | | || || ||||| || || || | ||| || | Sbjct 19587210 AGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAA--ACGA 19587153 Query 17215 TTTTTC-CTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || ||| | ||| || | ||||| || || || | || || ||||| || || || Sbjct 19587152 TTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATGA 19587093 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 || || || || || ||||| || ||||| |||||| || ||||| Sbjct 19587092 ATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCA-CGTGCTTC 19587049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517292966584680