Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq28226 138 1e-27 seq2 131 2e-25 >seq28226 Length=90112 Score = 138 bits (152), Expect = 1e-27 Identities = 296/433 (68%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || |||||||| ||||||||||| | ||||| || || ||||||||||| Sbjct 34795 ACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAA 34736 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| || ||||| || | ||| || || ||| || || || || || Sbjct 34735 ACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAA 34676 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||| |||||| | |||||||| | | | ||| || | | | || | || || Sbjct 34675 TATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAAT--CG 34618 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||||||| |||| || ||||| | | | |||||| || || || || || | Sbjct 34617 -ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTG 34559 Query 16441 AAACAATTTCTCTTTTTC--CTGAAT-ATCGATTATATACGTATCAATCAGTAAACTGTA 16497 |||||| | || || | |||| || | ||||| || ||||||| | ||| || Sbjct 34558 AAACAAACGATTCTTCTCAACAGAATCATGG---ATATAAGTTTCAATCAAGAGACTATA 34502 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCG 16556 ||| || || || || ||||| || || ||||| ||||| ||| ||||| || ||||| | Sbjct 34501 CATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCA-CGCGCCTCTG 34443 Query 16557 CTATTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 || ||| ||||| || | |||| | | || || ||||| || || ||||| Sbjct 34442 ATACTTGAACTTCTTTCATG---AATCTTCCTGCAAGATTCTCCAAGACAATGCCGTCGG 34386 Query 16614 TTGCAGCAAAAAA 16626 |||||||| || Sbjct 34385 AAGCAGCAAAGAA 34373 >seq2 Length=32560536 Score = 131 bits (144), Expect = 2e-25 Identities = 241/348 (69%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| ||||| || ||||| || |||||||| | ||||| ||||| |||||||| Sbjct 19587402 TAAACAAGCGAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGT 19587343 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 ||| || |||||| || ||||| || | |||||| || ||| ||| || ||||| Sbjct 19587342 TAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAA 19587283 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 |||||||| |||||| | |||||||| | | || ||| || | | | || | || Sbjct 19587282 AAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAAT- 19587224 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || ||||||||| |||| || ||||| | ||||| ||||| || || || Sbjct 19587223 -CG-ATCCATTTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGC 19587166 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAAT---ATCGATTATATACGTATCAATCAGTAAACT 16494 | |||||| | || || || ||| ||| | ||||| || ||||||| | ||| Sbjct 19587165 ATGAAACAA--ACGATTCTT-CTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACT 19587109 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA 16542 ||||| || || || || || || || || ||||| || || ||||| Sbjct 19587108 ATACATCTCAGAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAA 19587061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511164759453320