Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq28226 206 3e-48 seq2 194 2e-44 seq3 89.7 6e-13 seq4 86.0 7e-12 >seq28226 Length=90112 Score = 206 bits (228), Expect = 3e-48 Identities = 465/689 (67%), Gaps = 10/689 (1%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || ||||| || || || || || ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 ||||| |||| | ||||| ||||||||| ||| | | | | || | ||| | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 24020 ||| ||||| || |||||||| ||||| |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || || ||||| || | || |||||| ||||| |||||||| | | Sbjct 34906 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACA 34849 Query 24081 ATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 || | |||| || ||||||||| || || | ||| | | | |||||||| || Sbjct 34848 ATTG-TCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGC 34790 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 |||||||| || || || ||||| | ||| | || || ||||| || | || || Sbjct 34789 AAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGG 34730 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTC 24258 ||||| ||||| |||||||||||||| || | | || || |||||| || || || | Sbjct 34729 CATTAAACCACGTTTTTTAAGCCAAAAAATTG-CACAGAAACTTCCAGAGAAAAATATAC 34671 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGTATCCAC 24317 |||| || ||||| |||| | ||||| || | | | || || ||||| Sbjct 34670 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCAT 34612 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || ||||||||| || |||||| | | |||||| || ||||| || || | ||| | | Sbjct 34611 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAA 34552 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 || || ||| | ||| | | ||| || |||||||| ||||||||||| || ||| Sbjct 34551 CGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAA 34492 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || || || || || || |||||||||||| | ||||| | | || ||| Sbjct 34491 TGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGCGCCTCTGATACTTGAACT 34432 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTC 24526 ||| | |||| | |||| | ||| || Sbjct 34431 TCTTTCATGAATCTTCCTGCAAGATTCTC 34403 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 ||||| || ||||| | || ||||| |||| ||| |||||||| | ||||| ||| Sbjct 34231 GTTAGGTTGTTCCAGTGATGAGGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAT 34172 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || ||||| ||||| ||||| | |||||| | | | ||||||||||| || ||| Sbjct 34171 GAAGCTTCTGCTTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 34115 >seq2 Length=32560536 Score = 194 bits (214), Expect = 2e-44 Identities = 426/634 (67%), Gaps = 6/634 (1%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||| |||| | ||||| ||||||||| ||| | | | || | ||| | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 24020 || ||||| || |||||||| ||||| |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 19587510 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACA 19587453 Query 24081 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 |||| | | || |||||||| || | ||| | | | | ||||| ||| Sbjct 19587452 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCG 19587393 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||| Sbjct 19587392 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 19587333 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 |||| ||||| ||||||||||| || || | ||| ||||||||| || || ||| Sbjct 19587332 ATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCT 19587273 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGTATCCACTT 24319 || || ||||| |||| | |||||| || | | | || || ||||| || Sbjct 19587272 TCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTT 19587214 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||||| || ||||| | ||| || || ||||| || |||| ||| | | Sbjct 19587213 CATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAACG 19587154 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 || || ||| || ||| || | ||| || |||||||| ||||||||||| || ||||| Sbjct 19587153 ATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATG 19587094 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 ||| ||||| || || || || || ||||||||| Sbjct 19587093 AATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq3 Length=31061273 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||||||||| | || | || |||| ||| | || | ||||||||||| |||||| Sbjct 3456869 TCCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 3456810 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| || ||| || || || ||| |||||| || ||| || || Sbjct 3456809 ATTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 3456750 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || ||||| |||| || | || || || || ||||| || || Sbjct 3456749 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCGTAAAT 3456690 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||| |||||||| || |||| Sbjct 3456689 CCCCTCAATACTATCCTCTTTCAT 3456666 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || |||||||| || ||||||||| | | ||| | | || Sbjct 3456535 GTTCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTAAACCATCTCTGAGACATCAAATGA 3456476 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | || ||| || || ||||| | ||||||||| || | || | ||||||| Sbjct 3456475 TAAGTTTTGACAGCAGATTCAATATCATCCTTATGAATTCCAACAGAAACCCTCATTAAC 3456416 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCAA 54603 || || ||||||||||| || | ||| | || | ||||| || || || | || | Sbjct 3456415 ATATGTTGAGGTCTTTCCAC-AACTTCTCCTTGAACTTTCAACAGATAAGACCTCTCAAG 3456357 Query 54604 AGTTTTAAAACCAAAATA 54621 ||||| || ||||| || Sbjct 3456356 GGTTTTGAATCCAAAGTA 3456339 >seq4 Length=28907061 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 24231 || ||||||| || | |||||||||||| ||||||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGG 2895680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593431782222480