Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq28674 107 2e-18 seq1 105 6e-18 seq3 86.0 5e-12 >seq28674 Length=75340 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || ||||||||||| || |||| ||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||| ||| ||||||||||| | || |||||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | |||||||| || || ||| |||||||| | |||| | || ||||| ||| Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||| ||||| |||| | | ||||| || || Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGG 21042 >seq1 Length=28142018 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| |||| || ||||| || || ||||| ||| || ||| | || Sbjct 1586637 ATGCAGATATTTGTCAAGACTTTGACCGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586578 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || || ||||| |||||| | ||| |||||| Sbjct 1586577 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1586518 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| ||||||||| |||||||| | || | || ||||||||| Sbjct 1586517 CAGAGGTTGATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACCCTTGCGGATTACAAT 1586458 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 || |||||||| || ||||||||| | ||| | || || Sbjct 1586457 ATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGCGTTT 1586420 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || | || |||||||| ||||| || || | || Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || || || ||| | ||| ||| || Sbjct 12366464 GATACTATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 12366523 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || || || ||||||||| | ||| ||||||||||||| Sbjct 12366524 CAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366583 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || ||||| | || || ||| | || || || Sbjct 12366584 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGG 12366630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428132140307405