Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq28674 107 2e-18 seq4 82.4 6e-11 >seq1 Length=28142018 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| |||| || ||||| || || ||||| ||| || ||| | || Sbjct 1586637 ATGCAGATATTTGTCAAGACTTTGACCGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586578 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || || ||||| |||||| | ||| |||||| Sbjct 1586577 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1586518 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| |||||||||||||||||| | || | || ||||||||| Sbjct 1586517 CAGAGGTTGATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACCCTTGCGGATTACAAT 1586458 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 || || ||||| || ||||||||| | ||| | || || Sbjct 1586457 ATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGCGTTT 1586420 >seq28674 Length=75340 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || ||||||||||| || |||| ||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| ||| ||| ||||||||||| | || |||||| Sbjct 20876 GACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 20935 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| || | |||||||| || || |||||||||||| | |||| | || ||||| ||| Sbjct 20936 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAAT 20995 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || || ||||| ||||| |||| | | ||||| || || Sbjct 20996 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGG 21042 >seq4 Length=28907061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| || || |||||||| || ||| || Sbjct 27565911 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATTACATTGGAGGTAGAAAGTTCA 27565970 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| |||||| || || || || | || |||||| Sbjct 27565971 GATACGATCGATAATGTCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 27566030 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| ||||| |||||||| ||| | || | || || ||||| Sbjct 27566031 CAGAGGTTGATCTTTGCTGGCAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAAC 27566090 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| |||||||||||| | ||||| || Sbjct 27566091 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCG 27566125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410601287810114