Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq3 105 7e-18 seq4 104 2e-17 seq9364 102 8e-17 seq28803 95.1 1e-14 seq5139 95.1 1e-14 seq28674 93.3 4e-14 seq28626 87.8 2e-12 >seq1 Length=28142018 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || || || | | Sbjct 1587387 ATGCAAATCTTCGTGAAAACACTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 1587328 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | || || | ||||| || || || || ||||||| Sbjct 1587327 GACACCATCGACAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCA 1587269 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || ||| |||| |||| | || || || ||||| Sbjct 1587268 GCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAA 1587209 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||||||| ||||| || Sbjct 1587208 TATTCAGAAGGAGTCCACGCTTCATCTTGT 1587179 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | | Sbjct 1587159 ATGCAGATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 1587100 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || || |||||| | ||||| Sbjct 1587099 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 1587041 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || ||||| || |||| || || | ||| ||||| Sbjct 1587040 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGTACTTTGGCCGATTACAA 1586981 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || |||||||| Sbjct 1586980 TATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCG 1586945 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || | || || || ||||| ||| | || || || | | Sbjct 1586637 ATGCAGATATTTGTCAAGACTTTGACCGGTAAGACCATAACCTTGGAGGTGGAGAGCTCA 1586578 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || || || || ||| | || ||| Sbjct 1586577 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 1586518 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || |||||||| |||| || | | ||||| || ||||| Sbjct 1586517 CAGAGGTTGATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACCCTTGCGGATTACAAT 1586458 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || ||| |||| |||||||| || Sbjct 1586457 ATCCAGAAGGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGTGG 1586411 >seq3 Length=31061273 Score = 105 bits (116), Expect = 7e-18 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 40682 TCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 |||| ||| ||||| || ||||| ||||| || || || || || || ||| |||| || Sbjct 8017434 TCCGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTT 8017493 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 || | | |||| | | |||| |||| | || || | ||||| || || || || Sbjct 8017494 GAGTCTTCAGACACAATCGACAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGAATTCC 8017552 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | ||||||||||| ||||||| ||| || || ||| |||| || | ||||| ||| Sbjct 8017553 ACCTGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTCTCGC 8017612 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||||| || | || || || || || Sbjct 8017613 CGACTACAACATCCAGAAAGAATCAACTCTTCACCTTGT 8017651 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| ||||| || | || || ||| | | Sbjct 12366632 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAGACCATTACTTTGGAGGTAGAAAGCTCA 12366691 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||| || || | |||||| Sbjct 12366692 GACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAG 12366751 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || |||||||| || | || ||| | ||| |||||| Sbjct 12366752 CAAAGGTTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366811 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| || | || |||||||| ||| Sbjct 12366812 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGC 12366859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || |||||||| || || | || || || | | Sbjct 12366404 ATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCA 12366463 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| ||||| ||||| || ||| | |||||| Sbjct 12366464 GATACTATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 12366523 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || || | || || || |||||||| || | || ||| | ||| |||||| Sbjct 12366524 CAAAGGCTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAAC 12366583 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||| || ||||| || ||||| Sbjct 12366584 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCG 12366618 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || |||| || ||||| ||| | || |||| || || | Sbjct 12365948 ATGCAAATCTTTGTTAAGGCGCTTACAGGCAAGACCGTTACTCTCGAAGTTGAGAGTTCA 12366007 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || || || || ||||| | |||||| Sbjct 12366008 GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCATCAGACCAG 12366067 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || || |||||||| || | ||| ||||| || |||||| Sbjct 12366068 CAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAAC 12366127 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| |||| || ||| | ||| Sbjct 12366128 ATCCAAAAGGAGTCCACCCTCCATTTGGTG 12366157 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||| ||||| | || || || | Sbjct 12366176 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAGACCGTCACCCTTGAGGTTGAGAGTTCG 12366235 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || |||| ||||| || || || || | |||||| Sbjct 12366236 GATACGATAGAAAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAG 12366295 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || || | || || |||||||| || || | | || | || |||||| Sbjct 12366296 CAAAGGCTGATTTTTGCTGGAAAACAGCTTGAGGATGGCAGGACATTAGCTGATTACAAC 12366355 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||| || ||||| || ||||| Sbjct 12366356 ATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCG 12366390 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| || || || ||||| ||| | || || ||| | Sbjct 12367316 ATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTGGAGGTAGAAAGTTCA 12367375 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| |||||| | || || ||||| ||||| | || || Sbjct 12367376 GACACAATTGATAACG-TGAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCA 12367434 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || || |||| || | | || || |||||||| Sbjct 12367435 GCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAA 12367494 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| ||||||||| | || || ||||| || |||||| Sbjct 12367495 CATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGC 12367531 >seq4 Length=28907061 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || || || | Sbjct 27564999 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTGGAAGTTGAGAGTTCA 27565058 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || || || || ||||| |||||||| Sbjct 27565059 GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAG 27565118 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || || |||||||| |||| ||| ||||| ||| |||||| Sbjct 27565119 CAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCCGATTACAAC 27565178 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| | || || ||| | ||| Sbjct 27565179 ATCCAAAAGGAGTCTACCCTCCATTTGGTG 27565208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || ||||| || || || |||||| | || || || | | Sbjct 27565227 ATGCAAATATTTGTTAAGACCCTCACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 27565286 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| ||||||||||| ||||| | |||||| Sbjct 27565287 GATACCATTGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 27565346 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || ||||| || || | || ||| | || |||||| Sbjct 27565347 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGGACCTTAGCTGATTACAAC 27565406 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || || || || ||||| Sbjct 27565407 ATCCAGAAAGAATCCACTCTTCACCTTGTCTTGCG 27565441 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| |||||| | ||||| ||||| ||||| | || ||||| | | |||| | Sbjct 27565987 TCAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTG 27566046 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| || |||| || | | ||||| ||||||||||| ||||||||| | | Sbjct 27566047 CTGGCAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTA 27566106 Query 40886 CGCTGCATCTAGTGTTGCGC 40905 | || || || ||||||||| Sbjct 27566107 CTCTTCACCTTGTGTTGCGC 27566126 >seq9364 Length=1264 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||| || | || || || || Sbjct 738 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGAGTTCC 679 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| ||||||| || || || || ||||| |||||||| Sbjct 678 GATACCATAGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAG 619 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || ||||||||||| |||| ||| ||||| ||| |||||| Sbjct 618 CAGCGTTTGATTTTTGCTGGAAAACAGCTGGAGGACGGGCGGACCCTTGCCGATTACAAC 559 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| |||||| |||| || ||| Sbjct 558 ATCCAAAAGGAGTCCACCCTCCAT 535 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || ||||||||| |||| || || | Sbjct 510 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCATCACCCTCGAGGTGGAGAGTTCT 451 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||||||||| ||||| | |||||| Sbjct 450 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 391 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || ||||| || || | | ||| | || |||||| Sbjct 390 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 331 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || ||||| || ||||| Sbjct 330 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCG 296 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| |||||| | ||||||||| | | |||| || || || Sbjct 198 AAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAG 139 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||| || | ||| ||||||||||||||||| |||| || ||| Sbjct 138 CAGCTCGAAGATGGGCGAACTTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCAT 79 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 || || | || |||||||| || Sbjct 78 CTTGTCCTTCGTTTGAGGGGAGG 56 >seq28803 Length=52646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || || || | || || || | | Sbjct 33539 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATAACTTTGGAGGTTGAGAGCTCA 33480 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| |||||| | |||||| Sbjct 33479 GACACTATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAG 33420 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | |||| || || || ||||| || || | ||| || | ||| |||||| Sbjct 33419 CAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGGCGAACTTTGGCCGATTACAAC 33360 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| || | || |||||||| || Sbjct 33359 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGGTTGAGGGGAGG 33313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || || || | Sbjct 33767 ATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 33708 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||||||||| ||||| | |||||| Sbjct 33707 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 33648 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || ||||| || || | | ||| | || |||||| Sbjct 33647 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 33588 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || ||||| || ||||| Sbjct 33587 ATCCAGAAAGAATCCACTCTTCATCTTGTCTTGCG 33553 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||| ||||| | |||||||| | ||||| | || || || || || || Sbjct 8528 GACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAACTTGAA 8587 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || ||| | ||| || |||||||||||||| |||| || ||||| || | Sbjct 8588 GATGGCCGTACCTTGGCCGATTATAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTT 8647 Query 40903 CGCTTGAGGGGCGGC 40917 || |||||||| ||| Sbjct 8648 CGTTTGAGGGGAGGC 8662 >seq5139 Length=1344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || ||||| ||||| || || ||||| ||||| |||||| | |||| || || | Sbjct 1097 ATACAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCGCTCTCGAAGTTGAGAGTTCA 1156 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || || || || | ||| |||||||| Sbjct 1157 GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGAACCCACCGGACCAG 1216 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || || |||||||| || | ||| ||||| ||| |||||| Sbjct 1217 CAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCCGATTACAAC 1276 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| |||| || ||| | ||| Sbjct 1277 ATCCAAAAGGAGTCCACCCTCCATTTGGTG 1306 >seq28674 Length=75340 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || |||||||||||||| |||| |||||| | | Sbjct 20816 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCT 20875 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| || ||||| || || || | || || Sbjct 20876 GACACAATCGACAACG-TGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 20934 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || || |||| || | | || || || || || Sbjct 20935 ACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAA 20994 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| ||| | ||||| ||| Sbjct 20995 TATCCAGAAAGAGTCTACGCTTCAT 21019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||||||||| ||| | || || ||| || || Sbjct 20592 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCC 20651 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | || || || || || || | ||||| Sbjct 20652 GACACCATCGACAACG-TCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 20710 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG 40846 || || ||||||| ||| || ||||| || || |||| Sbjct 20711 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACG 20748 >seq28626 Length=87040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||||||||| ||| | || || ||| || || Sbjct 42591 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 42532 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| | ||||| | ||||| || || || || | || || Sbjct 42531 GATACCATCGACAACG-TCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCA 42473 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || || || || |||| || | | | || || || || || Sbjct 42472 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAA 42413 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| ||| | ||||| ||| Sbjct 42412 TATCCAGAAAGAGTCTACGCTACAT 42388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514967702187760