Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=31061273 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 ||||| |||||||| || || || || | ||| ||||||||||||||||| || || Sbjct 20758269 ACATGAGCGATCATGCATGTCAAGAGCGCATAAGATGCAATGTTAAAAGGCACGCCCAGG 20758328 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||| || || |||| |||||| | ||||| || | || |||| |||||| ||| Sbjct 20758329 CCCATGTCGGCAGATCGTTGATACATTTGACATGATAACTCCCCATTTGCCACATAGAAC 20758388 Query 97240 TGA 97242 ||| Sbjct 20758389 TGA 20758391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346618953682070