Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq28803 122 8e-23 seq9364 113 4e-20 seq28626 111 1e-19 seq3 111 1e-19 seq4 109 5e-19 seq28674 105 6e-18 seq5139 100 2e-16 seq1 95.1 1e-14 >seq28803 Length=52646 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||||||| || ||| ||| ||| |||||||| |||||| Sbjct 33343 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCA 33402 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||| || || || || |||||||||||| ||| || ||| Sbjct 33403 GCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTA 33462 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | |||||| ||||| | || | || ||||| || ||||| Sbjct 33463 ACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTGCCAGTAAGAGTC 33522 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 33523 TTCACAAAAATCTGCAT 33539 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| ||||| |||||||||||| | || ||| ||||| Sbjct 33786 CACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTC 33845 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || ||||||||||| || || || || || ||||| ||| Sbjct 33846 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 33905 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | || | ||| || | ||||| || || | || | || || Sbjct 33906 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTT 33965 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || || ||||| Sbjct 33966 GCCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 ||||||| || | || ||| || | || | || || ||||| || ||||||||||| | Sbjct 33539 TACCTCCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAG 33598 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || | || | ||| |||||||| |||||||| | || | | ||||| || || Sbjct 33599 CT-AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 33657 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| ||| || || || | || | |||||| | ||||| Sbjct 33658 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 33717 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| | || || ||||| || || || ||||| |||||||| Sbjct 33718 ACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 33767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 || || || || || ||||||||||| ||| | || || ||| ||||||| ||||| Sbjct 13157 GTGGATTCCTTCTGGATGTTGTAATCAGCTAAG-GTTCGGCCATCTACGAGCTGCTTTCC 13099 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGTT 118659 ||| | || | | |||||||| | || ||||||| |||||| |||| | || | Sbjct 13098 AGCAAAAATCAACCTTTGCTGATCCGAGGGAATGCCCTTCTTGTCCTGTA-TCTTAGCCT 13040 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | ||||| | |||||| ||||| | || | ||| || || || |||| Sbjct 13039 TCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAAAGTTATCGTCTTACCAGTAAGAG 12980 Query 118720 TTTTTACAAAAATCTGCAT 118738 |||| || ||||||||||| Sbjct 12979 TTTTGACGAAAATCTGCAT 12961 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || ||||| ||||| || || | ||| || ||||| |||||| Sbjct 33115 GTGGATTCCTTCTGGATGTTATAATCAGCCAAGGTTCTGCCATCTTCAAGCTGCTTTCCA 33174 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||||| || ||||| |||||||||||||| ||| || ||| Sbjct 33175 GCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCTTTT 33234 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | |||||| ||||| | || | || || || |||| || Sbjct 33235 ACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCTGTCAATGTC 33294 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 33295 TTCACAAAGATCTGCAT 33311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| | ||| | |||||||| || ||||||||||| || | || | ||| Sbjct 38760 CAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATC 38819 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT- 118644 ||| | || || ||||| |||| | | ||||||||| || || || || ||||||| Sbjct 38820 CTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTC 38879 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCG 118704 |||| |||||| || || | |||| || || | || || ||||| | || | | Sbjct 38880 CTGT-ATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAATGG 38938 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || || |||| || || ||||| ||||||||| || Sbjct 38939 TCTTCCCTGTCAACGTCTTCACAAAGATCTGCATGCCT 38976 >seq9364 Length=1264 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||||||| || ||| ||| ||| |||||||| |||||| Sbjct 86 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGCCCATCTTCGAGCTGCTTTCCA 145 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||| || || || || ||||||||||| ||| || ||| Sbjct 146 GCAAAGATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGCTTTC 205 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | |||||| ||||| | || | || ||||| || || || Sbjct 206 ACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCAGTAAGGGTC 265 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 266 TTCACAAAAATCTGCAT 282 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| ||||| |||||||||||| | || ||| ||||| Sbjct 530 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTCC 589 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| | || | ||||||||| || || || || || ||||| ||| | Sbjct 590 AGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 649 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | || | ||| || | ||||| || || | || | || || Sbjct 650 ATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTA 709 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| || ||||| Sbjct 710 CCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | || ||| || | || | || || ||||| || ||||||||||| | Sbjct 282 TACCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAG 341 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || | || | ||| |||||||| |||||||| | || | | ||||| || || Sbjct 342 CT-AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 400 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| ||| || || || | || | |||||| | ||||| Sbjct 401 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCC 460 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| | || || || || ||||| || ||||| || ||||| Sbjct 461 ACCTCGAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 >seq28626 Length=87040 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| || || | ||||| || | ||||||||||| || || || ||||| Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | | ||| || | || || || || |||| | ||||||||||| ||||| Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||||||| ||||| ||| || | |||| ||| || | | || ||| Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || | ||| | ||||||||||| || ||||| || || |||||||||| Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATGG 42593 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| ||||| ||||| || ||||| | ||| | |||||| ||||| Sbjct 42160 GTGAAGTGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTTCATCCATCCTCAAGCTG 42219 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| || || |||| | ||||| ||||| || || || |||||||| || ||| || Sbjct 42220 TTTACCGGCAAAGATCAATCGCTGTTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTT 42279 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | || || | ||||| ||||| | || | ||| || || || Sbjct 42280 GGCCTTCACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATCGTCTTCCCCGT 42339 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 42340 CAACGTCTTCACAAAAATCTGCAT 42363 >seq3 Length=31061273 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | || | || || || || || |||||||||||| Sbjct 12366632 TACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 12366573 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || ||||| |||||||| | || || | ||||| || || | Sbjct 12366572 CCAAGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 12366513 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| ||| || ||||| | || | || || | |||||| | Sbjct 12366512 GAATACCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAA 12366453 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||||||| || || || || |||||||||||||| Sbjct 12366452 CCTCCAAAGTAATCGTTTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366404 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| ||||| ||||||||||| | || ||| |||||| Sbjct 12366157 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 12366098 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || ||||||||||| || | || || || ||||| ||| Sbjct 12366097 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTTATCTTG 12366038 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | || | ||| || | ||||| || |||| || || || || Sbjct 12366037 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAACGGTCTT 12365978 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || | || ||||| || ||||| Sbjct 12365977 GCCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | || ||| || | || | || || || || || ||||||||||| | Sbjct 12366404 TACCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAG 12366345 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || || || | |||||| |||||||||||||| | || || | ||||| || || Sbjct 12366344 CTAAT-GTCCTGCCATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGT 12366286 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || || ||||||||| ||| || || || | ||| | || |||| ||||| Sbjct 12366285 GGAATACCTTCCTTGTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCA 12366226 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| || || || ||||| ||||| || ||||| || ||||| Sbjct 12366225 ACCTCAAGGGTGACGGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 12366176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| |||||||| ||||| || ||| || ||| || ||||| |||||| Sbjct 12367284 GTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTTCCA 12367225 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGT-T 118659 || | || | | ||||| || || || || || || ||||| |||| | || || | Sbjct 12367224 GCAAATATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTA--TCTTGGTCT 12367167 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | ||||| | |||||| ||||| | ||| | || || ||||| |||| Sbjct 12367166 TCACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAG 12367107 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || ||||||||||| Sbjct 12367106 TCTTCACGAAAATCTGCAT 12367088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| || | ||| | |||||| | || || ||| Sbjct 12367512 GTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCA 12367453 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 || |||| | | ||||||||| || || || |||||||| | |||| |||||| || Sbjct 12367452 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGT-ATTTTTGCCTT 12367394 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | || || ||||| | ||| | || || |||||||| || Sbjct 12367393 CACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATGGTCTTTCCGGTCAGCGT 12367334 Query 118721 TTTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 12367333 CTTCACAAAGATTTGCAT 12367316 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||||||| || || || ||| || ||||| ||||| Sbjct 12366828 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCG 12366769 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | ||||| || ||||| || |||||||||||| || || || Sbjct 12366768 GCAAAAATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGTATCTTGGCCTTC 12366709 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| || ||||| | || | || ||||| || || || Sbjct 12366708 ACATTGTCAATTGTGTCTGAGCTTTCTACCTCCAAAGTAATGGTCTTGCCTGTAAGCGTC 12366649 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 12366648 TTAACAAAAATCTGCAT 12366632 >seq4 Length=28907061 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| |||||||| ||||| |||||||||||| | || ||| ||||| Sbjct 27565208 CACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTC 27565149 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || ||||||||||| || || || || || ||||| ||| Sbjct 27565148 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 27565089 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | || | ||| || | ||||| || || | || | || || Sbjct 27565088 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTT 27565029 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || || ||||| Sbjct 27565028 GCCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||||||| || || || ||| |||||||| |||||| Sbjct 27565879 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCGAGCTGCTTTCCA 27565820 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 || | || | | |||||||| || || ||||||||||||| |||| || || || Sbjct 27565819 GCAAAAATCAACCTTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGT-ATCTTAGCCTT 27565761 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | ||||| | |||||| ||||| | || | || || || || ||||| Sbjct 27565760 CACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTACCAGTAAGAGT 27565701 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||||||||| Sbjct 27565700 TTTCACAAAAATCTGCAT 27565683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | || ||| || | ||| | || || ||||| || ||||||||||| | Sbjct 27565455 TACCACCACGAAGTCGCAAGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAATCAG 27565396 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 || | || || ||| |||||||| |||||||| | || | | ||||| || || Sbjct 27565395 CT-AAGGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGT 27565337 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| ||| || || || | || | ||| || | |||||| Sbjct 27565336 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCC 27565277 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| | || || ||||| || || || ||||| || ||||| Sbjct 27565276 ACCTCAAGGGTGATTGTCTTTCCGGTGAGGGTCTTAACAAATATTTGCAT 27565227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| | ||| | |||||||| || ||||||||||| || | || | ||| Sbjct 27566123 CAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATC 27566064 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | || || ||||| |||| | | ||||||||| || || || ||||||||||| Sbjct 27566063 CTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTC 27566004 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | |||| || || | || || ||||| | || | || Sbjct 27566003 TTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGT 27565944 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| || ||||| |||||||| Sbjct 27565943 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 >seq28674 Length=75340 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || ||||| |||||||| ||| ||||||||||||| || || || || || || ||||| Sbjct 20746 TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTA 20687 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||||| ||| || | |||| |||||| | | || ||||| | ||| | Sbjct 20686 TCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATG 20627 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| || ||||| || || ||||||||| Sbjct 20626 GTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 20591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| ||||| || ||||| | ||| | ||| || |||||||| ||| Sbjct 21240 GTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGCTGTTTACCA 21181 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||||||||||| || || || |||||||| || ||| || || Sbjct 21180 GCAAAGATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCCTGAATCTTCGCCTTC 21121 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | ||||| ||||| | || | ||| || || |||| || Sbjct 21120 ACATTATCAATAGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTTCCCGTCAACGTC 21061 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 21060 TTCACAAAAATCTGCAT 21044 >seq5139 Length=1344 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| ||||| |||||||||||| | || ||| |||||| Sbjct 1306 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCATCCTC 1247 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| |||||||| | || ||||||||||| || || || | || ||||| ||| Sbjct 1246 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGTTCCCTTCCTTATCTTG 1187 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | || | ||| || | ||||| || |||| | | || || Sbjct 1186 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGCGATGGTCTT 1127 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || || || || Sbjct 1126 GCCAGTGAGGGTCTTAACGAAGATTTGTAT 1097 >seq1 Length=28142018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || ||||||||||| || | || | |||||| Sbjct 1586200 CACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 1586259 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || ||| |||| || | ||||||||| || || || || ||||| || Sbjct 1586260 CAACTGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTG 1586319 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || | || | ||| || | |||||| ||||| | ||| | || || Sbjct 1586320 AATTTTGGCCTTCACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTTATGGTCTT 1586379 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || |||||||||||||| Sbjct 1586380 ACCAGTCAAGGTCTTGACAAAAATCTGCAT 1586409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433623925335292