Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq28674 132 7e-26 seq28626 111 2e-19 seq4 96.9 5e-15 seq28613 89.7 8e-13 seq9364 89.7 8e-13 seq28803 86.0 9e-12 >seq28674 Length=75340 Score = 132 bits (146), Expect = 7e-26 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||| ||||| ||||||||||| | ||||||||| | ||| || Sbjct 21024 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCTTCC 20965 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||| ||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||||| Sbjct 20964 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 20905 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || || ||| ||| ||||| |||||||| ||||| Sbjct 20904 ATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTTCGAGTGTGATGGTTTTG 20845 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||| ||||| | ||| |||||||| Sbjct 20844 CCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||||||||| ||||||||||| | |||||| || | ||| || | ||||| ||| Sbjct 21240 GTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCTTCAAGCTGTTTACCA 21181 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||||| |||||||| || ||||| || || ||||| || Sbjct 21180 GCAAAGATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCCTG 21134 >seq28626 Length=87040 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||| ||||| ||||| ||||||||||| | |||||| || | ||| || Sbjct 42383 ACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTCCTCCCATCTTCC 42442 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||| ||||||| |||||||| |||||||||||||| || ||||| Sbjct 42443 AATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 42501 >seq4 Length=28907061 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 10454 AGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGA 10513 ||| || ||||| | ||| || || | | ||||||| |||| |||||||| ||||| Sbjct 15999692 AGCGCCGAGATCGGGTTTGACTTGGAAGCATTCTATTGATGTTGGTGCTGGAGTGATTGA 15999751 Query 10514 CGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTAT 10573 | |||||||||||| ||| || || ||| | |||||||||||| ||| |||||| Sbjct 15999752 TGCTGATTATAGAGGACCTGTTGGGGTTATACTGTTTAATCATTCTGATGTTGATTTTGA 15999811 Query 10574 AATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATT 10619 | || | || |||||||| |||| |||||| ||| || ||| Sbjct 15999812 TGTGAAAATTGGTGATAGAATTGCTCAGTTAATAATTGAGAAGATT 15999857 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | || | ||| || ||||| || |||||||| | Sbjct 27565681 CCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCC 27565622 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | || ||||| ||||||||||| || |||||||| || ||| Sbjct 27565621 AGGGTTCTGCCATCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGA 27565562 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 27565561 ATACCTTCTTTATCTTG 27565545 >seq28613 Length=6376 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || |||| ||||| || | || ||||| ||| || || |||||||| Sbjct 5604 GTTCCTCCCCTGAGCCTTAGGACCAAGTGAAGCGTTGATTCCTTTTGA-ATGTTATAATC 5546 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | |||||| | || ||| || | || || |||||||||||||| || ||||| || || Sbjct 5545 AGCAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGG 5486 Query 146167 AGGAATTCCTTCTTTATC 146184 ||| || ||||| || || Sbjct 5485 AGGGATACCTTCCTTGTC 5468 >seq9364 Length=1264 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | ||| |||||||| || || ||||| | Sbjct 284 CCACCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCT 343 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || |||| ||| || | || ||||||||||||||||| |||||||| || || || Sbjct 344 AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 403 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| Sbjct 404 ATTCCCTCTTTGTCTTG 420 >seq28803 Length=52646 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| || || | ||| | ||| |||||||| || || ||||| | Sbjct 33541 CCTCCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCT 33600 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || |||| ||| || | || ||||||||||||||||| |||||||| || || || Sbjct 33601 AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 33660 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| Sbjct 33661 ATTCCCTCTTTGTCTTG 33677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743163456881920