Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq28626 95.1 8e-15 seq4 95.1 8e-15 seq3 95.1 8e-15 seq28803 89.7 3e-13 >seq28626 Length=87040 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||||| ||| || |||| |||| ||| |||||||| || || || || | Sbjct 42364 TCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGC 42423 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || ||||| ||||| ||||| || || | |||||||| || || Sbjct 42424 AAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 42483 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | | | | || | ||||| ||||| | Sbjct 42484 AATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTA 42542 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || |||||||||||||| || |||||||| ||||||||||| Sbjct 42543 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 >seq4 Length=28907061 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || || || | || ||| ||||| | |||| || ||||| ||||||||||| Sbjct 27566140 AATCCACCACGAAGGCGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 27566081 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || | | || ||||| |||||||| || || || | || |||||| || Sbjct 27566080 GCAAGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGT 27566021 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||||||| ||| ||| ||| | || | |||| ||| | ||| Sbjct 27566020 GGGATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCT 27565961 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || ||||| || || || | ||| ||||||||||||||||| Sbjct 27565960 ACCTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || || || |||||||| |||| || ||| |||| Sbjct 27565210 AGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCC 27565151 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || ||||| || |||||||||| || ||| | || ||||| || Sbjct 27565150 TCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTATC 27565092 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | |||| | ||| | || || |||| |||||||| Sbjct 27565091 TTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGT 27565032 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || || || ||||| |||||| Sbjct 27565031 CTTGCCAGTGAGGGTCTTAACGAAGATTTGCATC 27564998 >seq3 Length=31061273 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||||||||| ||||||||||||| || ||| | || Sbjct 8017654 AGAACAAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCT 8017595 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| ||||| || |||||||| || | | |||||||| Sbjct 8017594 TCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCT 8017535 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | | || | || | || || || || | || || || Sbjct 8017534 TGGATC-TTGGCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGT 8017476 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 8017475 CTTCCCTGTTAGGGTTTTCACGAAGATCTGCATC 8017442 >seq28803 Length=52646 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || ||||||||||| |||| || ||| |||| |||| |||||| || || ||| Sbjct 33805 TCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAA 33864 Query 34259 ATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||||| || ||| | || ||||| || ||||| ||| | || Sbjct 33865 ATCAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTATCTTGAATCTTGGCCTTAACATT 33923 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| | ||| | || || || | |||||||| ||||| ||||| || || || Sbjct 33924 GTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTAAC 33983 Query 34378 AAAGATCTGCATC 34390 ||||| |||||| Sbjct 33984 GAAGATTTGCATC 33996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322918239030560