Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 212 6e-50 seq28226 196 4e-45 seq4 87.8 2e-12 >seq2 Length=32560536 Score = 212 bits (234), Expect = 6e-50 Identities = 457/672 (68%), Gaps = 15/672 (2%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| || | ||| | ||| ||||| || || ||||| || | Sbjct 19587702 CATAACAGAAGCTTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 19587643 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATC- 16049 | ||||| |||||| ||||||||||||| | ||||| || | || || || Sbjct 19587642 AAGCGAAATCAATTCCATCCAATCAAAAGGATTCT--GAACATTATAAATTTTCCCACAA 19587585 Query 16050 CCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| || | ||||| ||||| || ||||| || |||||||| |||| || |||| | Sbjct 19587584 CCAAGCTCACCCAATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCG 19587525 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | || | ||| | ||||| | ||| | | | || || | |||| Sbjct 19587524 TTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACC 19587465 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTA--ACGGAGGGTT-TAATAAGTGTTTA 16225 || ||| || ||| | | || || || || | | | || | | ||| | || Sbjct 19587464 GCATCACGGACAATAGTTTTCAC-ACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATA 19587406 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 || || |||||| ||||||||||| | |||||||| | || | |||||||||| Sbjct 19587405 AAG--TAAACAAGCGAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAA 19587348 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||||| || |||||||||| ||| || || || ||| ||| Sbjct 19587347 AAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCA 19587288 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||| |||||||||||||| ||||| ||||| | || ||| | | | | | Sbjct 19587287 GAAAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGAT 19587228 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || |||||||| ||||||||| ||||| | | ||| || |||| Sbjct 19587227 GAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCA 19587171 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 ||||||| ||| ||| ||| || || | ||| |||||||| || || | | | Sbjct 19587170 ATTGCATGAAACAAACGATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGA 19587111 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGC 16584 |||||||| || ||||||||||| || || || ||||| ||||| || |||||| | || Sbjct 19587110 CTATACATCTCAGAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCA-CGTGC 19587052 Query 16585 TTCGGATATTTG 16596 |||||| | ||| Sbjct 19587051 TTCGGAGACTTG 19587040 >seq28226 Length=90112 Score = 196 bits (216), Expect = 4e-45 Identities = 460/682 (67%), Gaps = 23/682 (3%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| |||||||| | ||| | ||| ||||| || || ||||| || | Sbjct 35098 CATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 35039 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCAT 16048 | ||||| ||||| ||||||||||| || |||||| ||| ||| || || Sbjct 35038 AAGCGAAATCAAATCCATCCAATCAAAAGGA--TTCTGAACATTATAAATTTTCTCACAA 34981 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | || |||| || ||||| || ||||| || |||||||| |||| ||||||| Sbjct 34980 CCAAGCTCACACAACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCA 34921 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt-tttttCTATATTAAC 16167 |||||||| | || ||| | ||||| | || ||||| | || || | ||| Sbjct 34920 TTCATTCCAACCAAAGCGCAAGGAAGCGCTTC-GCAAACAAATTCCCTCTCAATCTCAAC 34862 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA------ATAAGTG 16221 ||| ||| | || | |||| || || || || | ||||| | ||| | Sbjct 34861 CGCGTCACGCACAAT-TGTCTTCACACGCT-CTTCACTCA--GTTTATTCCTCAAAAGCG 34806 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 ||| || | ||| |||||||| ||||| | ||||||||| | || | ||| || Sbjct 34805 AATAA--ATCAAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATT 34748 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 |||||| || | ||| ||||||| || |||||||||| |||||| || || || Sbjct 34747 TGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACT 34688 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 ||||| || |||||||||||||| ||||| ||||| | | ||| | | | Sbjct 34687 TCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC 34628 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 | | | || |||||||| ||||||||| ||||| | | ||| ||| || | Sbjct 34627 AGATGAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGT 34571 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 ||| || || | ||| ||| ||| || || ||| |||||||| || || | Sbjct 34570 CTCAATCGCGTGAAACAAACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAA 34511 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATC 16580 | ||||||||| || |||||||||||||| || || ||||| || || || |||||| | Sbjct 34510 GAGACTATACATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCA-C 34452 Query 16581 TAGCTTCGGATATTTGTACTTC 16602 || || |||| ||| ||||| Sbjct 34451 GCGCCTCTGATACTTGAACTTC 34430 >seq4 Length=28907061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 || |||||||||||||| || | || ||||| ||| |||| || ||||| ||||| Sbjct 2895779 ATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTC 2895720 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 ||||||||||||| ||||| ||||||| ||| ||||| || Sbjct 2895719 AGACCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 2895679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286230548600