Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq7 87.8 1e-12 >seq3 Length=31061273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || |||||||||||||||||||| || || ||| Sbjct 20758390 CAGTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGCCGACATG 20758331 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || ||||| || |||||| ||||||||| | || | ||||| || ||| Sbjct 20758330 GGCCTGGGCGTGCCTTTTAACATTGCATCTTATGCGCTCTTGACATGCATGATCGCTCAT 20758271 Query 20551 GTT 20553 ||| Sbjct 20758270 GTT 20758268 >seq7 Length=30551617 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || |||||||||||||| ||||| ||||| ||| Sbjct 6230855 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 6230796 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||||||| || || || |||||| |||||| || | || | |||||||| ||| Sbjct 6230795 GGCCTGGGTGTGCCATTTAACATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCAT 6230736 Query 20551 GTT 20553 || Sbjct 6230735 ATT 6230733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398994014737195