Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq28226 174 2e-38 seq2 165 8e-36 seq4 89.7 5e-13 >seq28226 Length=90112 Score = 174 bits (192), Expect = 2e-38 Identities = 427/638 (67%), Gaps = 11/638 (2%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||||| | ||| | || ||||| ||||||||||| || | || || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | |||| | | | ||| |||||||| || || | | Sbjct 35026 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCTCACAACCAAGCTCACACA 34968 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 || ||||| |||| ||||||||||| ||| ||| ||||||| |||||| || | | Sbjct 34967 ACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCA 34908 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | | |||||| | || || || || || | || Sbjct 34907 AAGCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACAA 34848 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGC 14208 | || | | | || | | || |||| | | | | | |||| ||||| || Sbjct 34847 TTGTCTTCACACGCTC--TTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGC 34790 Query 14209 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 14268 |||||| |||||||| || || || | |||||| || |||||||| ||||| || || Sbjct 34789 AAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGG 34730 Query 14269 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 14328 ||| || || |||||||| | |||||| |||||| ||| ||| || || ||||| || Sbjct 34729 CATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACC 34670 Query 14329 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 ||||| |||||| || | | | ||| |||| || | | ||| ||||| Sbjct 34669 TTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC-AGATGAATCG--ATCCA 34613 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||| ||||||| |||| ||| ||| ||||| || || || ||||| || | ||| || Sbjct 34612 TTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAA 34553 Query 14449 ATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 | | | |||||| || | | || || || || ||||| | | |||||||| |||| Sbjct 34552 ACGATTCTTCTCAACAGAATCATG-GATATAAGTTTCAATCAAGAGACTATACATCTCAG 34494 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATaaaaa 14545 | || || || || || || ||||| || || || ||| Sbjct 34493 AATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAA 34456 >seq2 Length=32560536 Score = 165 bits (182), Expect = 8e-36 Identities = 423/637 (66%), Gaps = 9/637 (1%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||| | || ||||| ||||||||||| || | || || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||||||| ||||| | |||| | | | ||| ||||||| || || | Sbjct 19587630 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACCCA 19587572 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| ||||| |||| ||||||||||| ||| ||| || |||| ||||| || | | Sbjct 19587571 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCA 19587512 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | ||||||| | || || || || || | || Sbjct 19587511 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAA 19587452 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 || | | | | || | | | | | | | | | | | ||| |||||| || | Sbjct 19587451 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGA 19587392 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 19587391 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 19587332 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | || || |||||||| | ||| || |||||| || ||| ||||| ||||| || | Sbjct 19587331 TTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTT 19587272 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 |||| |||||| || | | || ||| |||| || | | ||| ||||||| Sbjct 19587271 CAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC-AGATGAATCG--ATCCATT 19587215 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | ||||||| |||| ||| || ||| | || || ||||| |||| ||| ||| Sbjct 19587214 TCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAAC 19587155 Query 14451 GTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 | | |||||| ||| | ||| || || || ||||| | | |||||||| ||||| Sbjct 19587154 GATTCTTCTCAATAGAATCATTG--ATATAAGTTTCAATCAAGAGACTATACATCTCAGA 19587097 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATaaaaa 14545 || || ||||| || || ||||| ||||| || ||| Sbjct 19587096 ATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 2895678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482110149024680