Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15]
39,051 sequences; 345,990,850 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq28626 96.9 3e-15
seq28674 95.1 1e-14
>seq28626
Length=87040
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887
|| ||||||||| || || |||||| ||||||||||||| |||||| | || || |||||
Sbjct 42595 CACCATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATC 42536
Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
||| | | || | || || | ||||| | || ||||| | || |||
Sbjct 42535 CTCCGATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGA 42476
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
||||| || || || | ||| || || ||| |||||||| | |||| | |||||
Sbjct 42475 TCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTA 42416
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
| || ||||||||| | ||||| ||||| || | | |||||||| ||
Sbjct 42415 TAATATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAGGTTGCGCGGTGG 42365
>seq28674
Length=75340
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
|||||| || || || |||||| |||| |||||||| || || |||| ||||||||
Sbjct 20815 CATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTC 20874
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| | || | || |||| ||| ||| | |||||||| | || ||| ||
Sbjct 20875 TGACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 20934
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
||||| || || | ||| || || ||| |||||||| | ||| | ||||| |
Sbjct 20935 ACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAA 20994
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGT 25040
|| ||||||||| | ||||||||||| ||
Sbjct 20995 TATCCAGAAAGAGTCTACGCTTCATTTGGT 21024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418104914877920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |