Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq1 111 1e-19 seq28674 107 2e-18 seq28626 102 7e-17 seq28803 82.4 7e-11 seq28613 82.4 7e-11 >seq3 Length=31061273 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || ||||| || ||||| ||| |||| ||||| Sbjct 8017438 CAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGT 8017497 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | |||||| | || ||||||||||| | || || | Sbjct 8017498 CTTCAGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTG 8017557 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| || || ||||||||||| ||| | ||| | Sbjct 8017558 ACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACTCTCGCCGACT 8017617 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || |||||||| |||||||| || || || Sbjct 8017618 ACAACATCCAGAAAGAATCAACTCTTCACCTTGTTCT 8017654 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || ||| | || || || || Sbjct 12367088 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 12367147 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || ||| || |||||| ||||| | || || ||||| Sbjct 12367148 GACACTATTGACAATGTGAAGACCAAGA-TACAGGACAAAGAAGGTATTCCCCCAGACCA 12367206 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | ||||| ||||| || ||| | ||||| |||| || |||||||| Sbjct 12367207 GCAAAGGTTGATATTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAA 12367266 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| ||||| || || ||||| || || ||| | |||||||| |||| Sbjct 12367267 CATTCAGAAAGAGTCCACGCTTCACCTTGTCCTTCGTCTGAGGGGAGGTA 12367316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || || || || ||||| | || ||||| || Sbjct 12366176 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAGACCGTCACCCTTGAGGTTGAGAGTTCG 12366235 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| ||||| | || ||||||||||| | || || |||||| Sbjct 12366236 GATACGATAGAAAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAG 12366295 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || || ||||| |||||| | || || | ||| || ||| ||||| || Sbjct 12366296 CAAAGGCTGATTTTTGCTGGAAAACAGCTTGAGGATGGCAGGAC-ATTAGCTGATTACAA 12366354 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || ||||| || |||||||| || Sbjct 12366355 CATCCAGAAGGAATCCACCCTTCATCTTGT 12366384 >seq1 Length=28142018 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || || || || |||||| | || || || || Sbjct 1587387 ATGCAAATCTTCGTGAAAACACTCACCGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 1587328 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||||||| | || || |||||| Sbjct 1587327 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 1587268 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || |||||||||||| | |||| | ||||| || Sbjct 1587267 CAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAAT 1587208 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || |||||||| || || | ||| | || |||| Sbjct 1587207 ATTCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGGTA 1587159 >seq28674 Length=75340 Score = 107 bits (118), Expect = 2e-18 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || |||||||| || ||| | || |||||| | || Sbjct 20591 CATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTC 20650 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | |||||| | ||| || |||||||| | || || ||||| Sbjct 20651 CGACACCATCGACAACGTCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 20710 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||| || ||||| | |||||| | | |||||| Sbjct 20711 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACG----GCCGNNNNNNNNTTATAA 20766 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| || || ||||| || || Sbjct 20767 CATCCAAAAAGAATCAACGCTCCATCTCGTTCT 20799 >seq28626 Length=87040 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || |||||||| || ||| | || || ||| | || Sbjct 42592 CATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTC 42533 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | |||||| | ||| ||||||||||| | || || || || Sbjct 42532 CGATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCA 42473 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || || || || || |||||||| | |||| | |||||||| Sbjct 42472 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAA 42413 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAG 31407 || || ||||| || || || ||| |||| ||||| Sbjct 42412 TATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAG 42377 >seq28803 Length=52646 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||| || || || || | || || ||| || Sbjct 32760 CATGCAGATCTTTGTGAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTAGAAAGTTC 32701 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| | |||| |||||||||||| | || || || || Sbjct 32700 TGATACAATCGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCA 32641 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| || || ||||| || | ||| | || || || Sbjct 32640 GCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAA 32581 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || ||||| ||||||||||| || Sbjct 32580 CATTCAGAAGGAATCTACTCTTCATCTTGT 32551 >seq28613 Length=6376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || ||||||||| | | || || ||||| || ||| |||| Sbjct 5467 GGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGA 5526 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||||||||||||||| ||||| || ||||| |||| || Sbjct 5527 AGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACGCTTCACTTGGTCCT 5586 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 5587 AAGGCTCAGGGGAGG 5601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445548804703920