Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq28226 185 1e-41 seq4 86.0 8e-12 seq3 86.0 8e-12 >seq2 Length=32560536 Score = 196 bits (216), Expect = 6e-45 Identities = 424/632 (67%), Gaps = 2/632 (0%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||| ||||||| ||||| |||||| |||||||| | | || | ||| | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||||| || || || || ||||| |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||| || || || ||||||| ||||| ||||||| | ||| Sbjct 19587510 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAAT 19587451 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | | | || |||||||| || | | ||| | | | | ||||| ||||| Sbjct 19587450 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGAA 19587391 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||||| Sbjct 19587390 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 19587331 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || ||||| ||||||||||| || || | | || ||| ||||| || || ||||| Sbjct 19587330 TAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTTC 19587271 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTTTT 33768 || |||||| |||| | ||| || || | | | || || ||||| || Sbjct 19587270 AACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTTCA 19587212 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||||||| || ||||| | ||| || ||||| || || |||| ||| | | | Sbjct 19587211 TAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAACGAT 19587152 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 | || ||| || ||| || | |||||| || ||||| ||||||||||| || ||||||| Sbjct 19587151 TCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATGAA 19587092 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 | ||||| || || ||||| || ||||||||| Sbjct 19587091 TATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq28226 Length=90112 Score = 185 bits (204), Expect = 1e-41 Identities = 456/687 (66%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || ||||| || || || || || ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||| ||||| |||||| |||||||| | | | || | ||| | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA- 33468 ||| ||||| || || || || ||||| |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 33469 -GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | || ||||| || | || |||||| ||||| ||||| | | | Sbjct 34906 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACA 34849 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 || | || ||||||||| || || ||| | | | |||||||| || Sbjct 34848 ATTGTCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGCA 34789 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 |||||||| || || || ||||| | ||| | || || ||||| || | || ||| Sbjct 34788 AAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGGC 34729 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 |||| ||||| |||||||||||||| || | | ||| ||| || || || || ||| Sbjct 34728 ATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACCT 34669 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTT 33766 || || |||||| |||| | || || || | | | || || ||||| || Sbjct 34668 TCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTT 34610 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||||| || |||||| | | |||||| || || || || || | ||| | | Sbjct 34609 CATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAACG 34550 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 || || ||| | ||| | | |||||| || ||||| ||||||||||| || ||||| Sbjct 34549 ATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATG 34490 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||| || || || || ||||| |||||||||||| | ||||| | | || ||||| Sbjct 34489 AATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGCGCCTCTGATACTTGAACTTC 34430 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTC 33973 | | |||| | |||| | ||| || Sbjct 34429 TTTCATGAATCTTCCTGCAAGATTCTC 34403 >seq4 Length=28907061 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678 || ||||||| || | |||||||||||| ||||||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGG 2895680 >seq3 Length=31061273 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || |||||||| || ||||||||| | | ||| | | || Sbjct 3456535 GTTCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTAAACCATCTCTGAGACATCAAATGA 3456476 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | | ||| || || ||||| | ||||||||| || | || | ||||||| Sbjct 3456475 TAAGTTTTGACAGCAGATTCAATATCATCCTTATGAATTCCAACAGAAACCCTCATTAAC 3456416 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || || ||||||||||| |||| || | | |||||||| || || | || | Sbjct 3456415 ATATGTTGAGGTCTTTCCACAACTTCTCCTTGAACTTTCAACAGATAAGACCTCTCAAGG 3456356 Query 63843 GTTTTAAAACCAAAATA 63859 ||||| || ||||| || Sbjct 3456355 GTTTTGAATCCAAAGTA 3456339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629510162411280