Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq28226 168 6e-37 seq2 156 4e-33 seq4 84.2 2e-11 >seq28226 Length=90112 Score = 168 bits (186), Expect = 6e-37 Identities = 426/645 (66%), Gaps = 2/645 (0%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || |||||||| | ||| || || ||||| ||||| || || | || || || | Sbjct 35085 TTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAAA 35026 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | | ||| |||||||| | ||| || Sbjct 35025 TCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAAC 34966 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || || || || ||||||||| ||| ||| || |||||| || | | | Sbjct 34965 AACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAAA 34906 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | |||| || | | ||| ||| | || || | |||||| ||| | || Sbjct 34905 GCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACAATT 34846 Query 11579 GACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAA 11638 | | | | | || | | || || ||| | | | || ||||| |||||| Sbjct 34845 GTCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGCAAAA 34786 Query 11639 TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698 || ||||| | |||||||| | || || ||||| ||||| ||||| || ||||| Sbjct 34785 TCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGGCATT 34726 Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758 || || |||||||| | |||||| || ||| || ||||| || ||||| || || Sbjct 34725 AAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTTCA 34666 Query 11759 ACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTT-GTTGCTAGATATCCATTTTCT 11817 ||| ||||| || || | ||||| || || | | || | |||||||| | Sbjct 34665 ACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTTCAT 34607 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 |||||||||||||||||| | | || || || || || |||| ||| ||| | | Sbjct 34606 AGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAAACGATT 34547 Query 11878 TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAAT 11937 || || | | ||| | ||| || || || || | ||||||||| || |||||||| Sbjct 34546 CTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGAATGAAT 34487 Query 11938 ATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || || || || || ||||| |||||| || |||||||| Sbjct 34486 ATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGCGCCTCTGA 34442 >seq2 Length=32560536 Score = 156 bits (172), Expect = 4e-33 Identities = 428/649 (66%), Gaps = 10/649 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || | ||| || || ||||| ||||| || || | || || || | Sbjct 19587689 TTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAAT 19587630 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | | ||| ||||||| | ||| ||| Sbjct 19587629 TCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAAT 19587570 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || || || || ||||||||| ||| || || ||||| || | | | Sbjct 19587569 AACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAAA 19587510 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | |||| || | | ||| || | || || | |||||||||| || || Sbjct 19587509 GCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAATA 19587450 Query 11579 GACGTTATAA---CTTC-CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | | | |||| || || | | | | | || | |||| |||||| || Sbjct 19587449 GTTTTCACACGCTCTTCACTAAGTTTCTT--TCTCAAAAGCGAATAAAG--TAAACAAGC 19587394 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||||||||| | ||||||||| | || || || || ||||| ||||| || || Sbjct 19587393 GAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 19587334 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || || |||||||| | ||| || || ||| ||| |||||||| ||||| || Sbjct 19587333 CATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACC 19587274 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCCATT 11813 || ||| ||||| || || | |||||| || || | | || | ||||||| Sbjct 19587273 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATG-AATCGATCCATT 19587215 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | | ||||||||||||||||| | || || || || || || | ||| ||| Sbjct 19587214 TCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAAC 19587155 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | || || ||| ||| | | ||| || || || || | ||||||||| || |||| Sbjct 19587154 GATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAAT 19587095 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||||||| || || || || || || |||||| ||||| || || Sbjct 19587094 GAATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCACGTGCTTCGGA 19587046 >seq4 Length=28907061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | ||| ||||||||| ||||||||||| || ||||| | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA 11728 || ||||| ||||||| ||||| | ||| ||||| ||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 2895678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468296095475440