Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 219 6e-52 seq28226 214 3e-50 seq3 98.7 1e-15 seq4 89.7 7e-13 >seq2 Length=32560536 Score = 219 bits (242), Expect = 6e-52 Identities = 435/636 (68%), Gaps = 10/636 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||| ||||| ||||||||||||||| | | || | ||| | Sbjct 19587630 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACCCAA 19587571 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 49845 || ||||| || ||||| || ||||| |||||| ||||| |||||||| | | Sbjct 19587570 TAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCAA 19587511 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || || ||||| || || || ||||||| ||||| |||||||| | | Sbjct 19587510 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACA 19587453 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 |||| | | || |||||||| || | ||| | | | | ||||| ||| Sbjct 19587452 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCG 19587393 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| || || ||||| ||||| | ||| || ||||| ||||| || | || ||| Sbjct 19587392 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 19587333 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTC 50083 |||| ||||| ||||||||||| || || | | |||| || |||||||| || || | Sbjct 19587332 ATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAAAA-ACTTCCAGAAAAAAATATAC 19587275 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGTATCCAC 50142 |||| || ||||| ||||| | ||| || || | | | || || ||||| Sbjct 19587274 CTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCAT 19587216 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || ||||||||| || ||||| | ||| || ||||| || || |||| ||| | | Sbjct 19587215 TTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAA 19587156 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 || || ||| || ||| || | |||||| || ||||| ||||||||||| || ||| Sbjct 19587155 CGATTCTTCTCAATAGAATCATTGATATAAGTTTCAATCAAGAGACTATACATCTCAGAA 19587096 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 ||||| ||||| || || ||||| || ||||||||| Sbjct 19587095 TGAATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq28226 Length=90112 Score = 214 bits (236), Expect = 3e-50 Identities = 435/637 (68%), Gaps = 12/637 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || ||||| || || || || || ||||| |||||||| || | | || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||| ||||| ||||||||||||||| | | | || | ||| | | Sbjct 35026 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCACAACCAAGCTCACACAA 34967 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 49845 ||| ||||| || ||||| || ||||| |||||| |||| ||||||||| | | Sbjct 34966 CAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCAA 34907 Query 49846 AGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 49903 || || ||||| || |||| || |||||| ||||| ||||| || | Sbjct 34906 AGCGCAA--GGAAGCGCTTCGCA--AACAAATTCCCTCTCAATCTCAACCGCGTCACGCA 34851 Query 49904 TAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963 ||| | | || ||||||||| || || | ||| | | | |||||||| | Sbjct 34850 CAATTGTCTTCACACGCTCTTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGG 34791 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | |||||||| || || || ||||| | ||| || || || ||||| || | || | Sbjct 34790 CAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAG 34731 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATT 50082 |||||| ||||| |||||||||||||| || | | || || ||||| || || || Sbjct 34730 GCATTAAACCACGTTTTTTAAGCCAAAAAATTG-CACAGAAACTTCCAGAGAAAAATATA 34672 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGTATCCA 50141 ||||| || ||||| ||||| | || || || | | | || || ||||| Sbjct 34671 CCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATG-AATCGATCCA 34613 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || ||||||||| || |||||| | | |||||| || || || || || | ||| | Sbjct 34612 TTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAA 34553 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | || || ||| | ||| | | |||||| || ||||| ||||||||||| || || Sbjct 34552 ACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAGAGACTATACATCTCAGA 34493 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 |||||| || || || || ||||| |||||||||||| Sbjct 34492 ATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAA 34456 >seq3 Length=31061273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || |||||||| || ||||||||| | | ||||| | || Sbjct 3456535 GTTCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTAAACCATCTCTGAGACATCAAATGA 3456476 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | | ||| ||||| ||||| | ||||||||| || | || | ||||||| Sbjct 3456475 TAAGTTTTGACAGCAGATTCAATATCATCCTTATGAATTCCAACAGAAACCCTCATTAAC 3456416 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCAA 80513 || || ||||||||||| || | ||| | || | |||||||| ||||| | || | Sbjct 3456415 ATATGTTGAGGTCTTTCCAC-AACTTCTCCTTGAACTTTCAACAGATAAGACCTCTCAAG 3456357 Query 80514 AGTTTTAAAACCAAAATA 80531 ||||| || ||||| || Sbjct 3456356 GGTTTTGAATCCAAAGTA 3456339 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||||||||| | || | || |||| ||| | || | ||||||||||| |||||| Sbjct 3456869 TCCTCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 3456810 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || ||| || || || ||| |||||| || ||| || || Sbjct 3456809 ATTAGAAGTCCCATTTGTTCCGCGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 3456750 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| ||||| |||| || | || || || || ||||| || || Sbjct 3456749 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCGTAAAT 3456690 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 ||||| || ||||| || |||| Sbjct 3456689 CCCCTCAATACTATCCTCTTTCAT 3456666 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| ||||||||||||||| |||||||| || || || || || Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 || ||||||| || | |||||||||||| ||||||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGG 2895680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717918186063640