Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq28226 170 2e-37 seq4 89.7 5e-13 >seq2 Length=32560536 Score = 181 bits (200), Expect = 1e-40 Identities = 429/640 (67%), Gaps = 10/640 (2%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||| | || ||||| ||||||||||| || | || || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||||||| ||||| | |||| | | | ||| ||||||| || || | Sbjct 19587630 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACCCA 19587572 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| |||||||||| |||||||||||| ||| ||| || |||| ||||| || | | Sbjct 19587571 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCA 19587512 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | ||||||| | || || || || || | || Sbjct 19587511 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAA 19587452 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 || || | | | ||| | | | | | | | | | | | ||| |||||| || | Sbjct 19587451 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGA 19587392 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 19587391 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 19587332 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | || || |||||||| | ||| || |||||| ||| || ||||| ||||| || | Sbjct 19587331 TTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTT 19587272 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||| |||||| || | | || ||| |||| || | | ||| ||||||| Sbjct 19587271 CAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC-AGATGAATCG--ATCCATT 19587215 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 | ||||||| |||| ||| || ||| | || || ||||| |||| ||| ||| Sbjct 19587214 TCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAAAC 19587155 Query 14119 ATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | |||||| ||| | ||| || || || ||||| | | |||||||| ||||| Sbjct 19587154 GATTCTTCTCAATAGAATCATTG--ATATAAGTTTCAATCAAGAGACTATACATCTCAGA 19587097 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215 || || ||||| || || ||||| ||||| || |||||| Sbjct 19587096 ATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAAGCA 19587057 >seq28226 Length=90112 Score = 170 bits (188), Expect = 2e-37 Identities = 429/641 (67%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| | ||| | || ||||| ||||||||||| || | || || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||||| | |||| | | | ||| |||||||| || || | | Sbjct 35026 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCTCACAACCAAGCTCACACA 34968 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 || |||||||||| |||||||||||| ||| ||| ||||||| |||||| || | | Sbjct 34967 ACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCA 34908 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | | |||||| | || || || || || | || Sbjct 34907 AAGCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACAA 34848 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGC 13876 | | | | | ||| | | || |||| | | | | | |||| ||||| || Sbjct 34847 TTGTCTTCACACGCTC--TTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGGC 34790 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 |||||| |||||||| || || || | |||||| || |||||||| ||||| || || Sbjct 34789 AAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAGG 34730 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 ||| || || |||||||| | |||||| |||||| || || || || ||||| || Sbjct 34729 CATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATACC 34670 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 ||||| |||||| || | | | ||| |||| || | | ||| ||||| Sbjct 34669 TTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC-AGATGAATCG--ATCCA 34613 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||| ||||||| |||| ||| ||| ||||| || || || ||||| || | ||| || Sbjct 34612 TTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAACAA 34553 Query 14117 ATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | | |||||| || | | || || || || ||||| | | |||||||| |||| Sbjct 34552 ACGATTCTTCTCAACAGAATCATG-GATATAAGTTTCAATCAAGAGACTATACATCTCAG 34494 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215 | || || || || || || ||||| || || || |||||| Sbjct 34493 AATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCA 34453 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 2895678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479493826773400