Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq28226 179 4e-40 seq4 89.7 5e-13 >seq2 Length=32560536 Score = 181 bits (200), Expect = 1e-40 Identities = 427/639 (67%), Gaps = 13/639 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || ||||||||||||||||| || | || || || Sbjct 19587690 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 19587631 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 |||||| |||| || ||||| | |||| | | | ||| ||||||| || || | Sbjct 19587630 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACCCA 19587572 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||| |||||||||| |||||||||||| ||| ||| || |||| ||||| || | | Sbjct 19587571 ATAACCTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATTCCAACCA 19587512 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | | ||||||| | || || || || || | || Sbjct 19587511 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATCTCAACCGCATCACGGACAA 19587452 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 || | || | | || | | | | | | | | | | | ||| |||||| || | Sbjct 19587451 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCGA 19587392 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 19587391 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 19587332 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | || || |||||||| | ||| || |||||| || ||| ||||| ||||| || | Sbjct 19587331 TTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAACTTCCAGAAAAAAATATACCTT 19587272 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCA 13844 |||| |||||| || | | || ||| |||| || | | | || ||||| Sbjct 19587271 CAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGA-----ATCAGATGAATCGATCCA 19587217 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| ||||||| |||| ||| || ||| | || || || ||||||| || || Sbjct 19587216 TTTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATCGTCTCAATTGCATGAAACAA 19587157 Query 13905 ATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | | | |||||| ||| | ||| || || || ||||| | | |||||||| ||| Sbjct 19587156 ACGATTCTTCTCAATAGAATCATTG--ATATAAGTTTCAATCAAGAGACTATACATCTCA 19587099 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATaaaaa 14001 || || || ||||| || || ||||| ||||| || ||| Sbjct 19587098 GAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq28226 Length=90112 Score = 179 bits (198), Expect = 4e-40 Identities = 431/641 (67%), Gaps = 17/641 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | ||| | || ||||||||||||||||| || | || || || Sbjct 35086 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 35027 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | | ||| |||||||| || || | | Sbjct 35026 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCTCACAACCAAGCTCACACA 34968 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || |||||||||| |||||||||||| ||| ||| ||||||| |||||| || | | Sbjct 34967 ACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACCA 34908 Query 13547 GTTTTACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 ||||| || | || |||||| | || || || || || | | Sbjct 34907 AAGCGCAAGGAA-GCGCTTCGCAAACAAATTCCCTCTCAATCTCAACCGCGTCACGCACA 34849 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACG 13663 || |||| | | || | | || |||| | | | | | |||| ||||| | Sbjct 34848 ATTGTCTTCACACGCTC--TTCACTCAGTTTATTCCTCAAAAGCGAATAAATCAAACAGG 34791 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 ||||||| |||||||| || || || | |||||| || |||||||| ||||| || | Sbjct 34790 CAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTTGAAAAAGTTAAACCAG 34731 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||| || || |||||||| | |||||| |||||| ||| ||| || || ||||| | Sbjct 34730 GCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTTCCAGAGAAAAATATAC 34671 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--AT 13841 | ||||| |||||| || | | | ||| |||| || | | | || || Sbjct 34670 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGA-----ATCAGATGAATCGAT 34616 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| ||||||| |||| ||| ||| ||||| || || || || || || | || Sbjct 34615 CCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTCTCAATCGCGTGAAA 34556 Query 13902 TAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 ||| | | |||||| || | | || || || || ||||| | | |||||||| | Sbjct 34555 CAAACGATTCTTCTCAACAGAATCATG-GATATAAGTTTCAATCAAGAGACTATACATCT 34497 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATaaaaa 14001 |||| || || || || || || ||||| || || || ||| Sbjct 34496 CAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAA 34456 >seq4 Length=28907061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| ||||| ||||| |||||| || ||||| ||||| ||||| | Sbjct 2895776 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 2895717 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 2895716 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 2895678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478355182859640