Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq28626 86.0 5e-12 >seq1 Length=28142018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| |||||| || | ||||||||| | | || | | | || |||||||||||||| Sbjct 1586440 AGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTTCCATCTTCCAATTGTTTGCC 1586499 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTT 43031 ||||| ||||| | ||| ||||| | || | |||||| || || |||| | || Sbjct 1586500 TGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTT 1586559 Query 43032 GACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAG 43090 ||| || ||| ||||| ||| ||| || || | ||||| || || ||||| | || Sbjct 1586560 GACATTGTCAATGGTGTC-TGAGCTCTCCACCTCCAAGGTTATGGTCTTACCGGTCAAAG 1586618 Query 43091 TTTTCACAAAAATTTGCAT 43109 | || ||||| || ||||| Sbjct 1586619 TCTTGACAAATATCTGCAT 1586637 >seq28626 Length=87040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| || | |||||||| | || ||| || || | ||| ||||| | Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| || || ||||| ||||||||||| ||||| | || Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| ||||||| || | | || ||| | || || Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381188093216958