Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq1 86.0 6e-12 seq9364 82.4 8e-11 >seq3 Length=31061273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028 ||||| || | ||||| || ||||| || || ||||||||||| ||| | ||| || Sbjct 12366390 CGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCT-AATGTCCTGCC 12366332 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || ||||| |||||| | ||||| | |||||| || || || || ||||| || Sbjct 12366331 ATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGGAATACCTTCCTT 12366272 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| || || | | ||| | ||| |||| || || |||| || || Sbjct 12366271 GTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAACCTCAAGGGTGAC 12366212 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||||| | || || || || ||||||||| Sbjct 12366211 GGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCATA 12366175 >seq1 Length=28142018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| | ||||| || || || || || || |||||||| Sbjct 1587161 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 1587220 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | || || || || |||| ||||||||||| || ||||| Sbjct 1587221 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGA 1587280 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | || || Sbjct 1587281 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 1587340 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| ||||| | |||||| ||||| |||||||| Sbjct 1587341 TCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 >seq9364 Length=1264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | ||||| | || | ||||| || ||||| || || |||||||||||| | Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | |||||||| || || |||||| |||||| | |||||| || || || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| || ||| | | || | ||||| | | || || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATAGTGTCTGAGCTCTCAACC 235 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || || || || |||||| Sbjct 236 TCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATA 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506766907258320