Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9364 136 3e-27 seq28626 113 3e-20 seq28803 109 4e-19 seq3 109 4e-19 seq28674 107 1e-18 seq4 98.7 7e-16 seq1 93.3 3e-14 seq5139 86.0 5e-12 >seq9364 Length=1264 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| |||||||| || ||||| |||||||||||| || | | | |||| || Sbjct 529 AACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTC 588 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | |||||||| || ||||| ||| || ||||| || || Sbjct 589 CAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 648 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| | |||||||||||| | | || || || | |||||||| || Sbjct 649 AATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTT 708 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || ||||| |||||||| Sbjct 709 ACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTC 15210 || || | |||||| ||||| ||||| || ||||||||||| ||| || | || | || Sbjct 299 AAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCTGCCATC 357 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | || || ||||| | ||||| | ||| ||||| ||| ||||| |||||||| Sbjct 358 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 417 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||| ||| ||| | |||||||| || | | || || || | ||| ||||| Sbjct 418 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCGAGGGTGATGGT 477 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| ||||||||| Sbjct 478 CTTTCCAGTGAGAGTCTTCACAAAGATTTGCATA 511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || | |||||||||||| || || || |||||||||||| Sbjct 56 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 115 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | | ||||| | || || ||||| | ||||| | ||| ||||| || Sbjct 116 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 175 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| || ||| || ||| | || || || || | || || Sbjct 176 ATACCCTCCTTGTCCTGAATCTTAGCT-TTCACATTGTCAATAGTGTCTGAGCTCTCAAC 234 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || || || || || |||||||| |||||| Sbjct 235 CTCCAAAGTAATAGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCATA 283 >seq28626 Length=87040 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| || | ||| ||||| || || || ||||| || || || ||||| Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | ||||| ||||| || || || | ||||| || || || || ||| Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| |||||| || || | || ||||||||| |||||| Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| |||||||| || || || ||||| || || || ||||| Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 >seq28803 Length=52646 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTC 15210 || || | |||||| ||||| ||||| || ||||||||||| ||| || | || | || Sbjct 33556 AAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCTGCCATC 33614 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | || || ||||| | ||||| | ||| ||||| ||| ||||| |||||||| Sbjct 33615 TTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTC 33674 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||| ||| ||| | |||||||| || | | || || || | ||| ||||| Sbjct 33675 TTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGT 33734 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||| || |||||| Sbjct 33735 CTTTCCGGTGAGGGTCTTAACAAAGATCTGCATA 33768 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || |||||||||||||||||| || | | | |||| || Sbjct 33787 ACCAAATGAAGGGTTGACTCCTTTTGTATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 33846 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||| ||| || ||||| ||| || ||||| || || | Sbjct 33847 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 33906 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||||||||| | | || || || | || ||||| || Sbjct 33907 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCTTG 33966 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 33967 CCAGTGAGGGTCTTAACGAAGATTTGCAT 33995 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 |||||||||||| || || || ||||| ||||| || || |||| | ||||| | | Sbjct 33108 ATGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAAG-GTTCTGCCATCTTCAAGCT 33166 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | || ||||| | ||||| | ||| ||||| ||||| || || ||||| ||| | Sbjct 33167 GCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCT 33226 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 | ||| |||||| | || ||||| || | || || || || |||||||| || ||| Sbjct 33227 TAGCT-TTTACATTGTCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATGGTCTTCCCT 33285 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || || ||||| || |||||| Sbjct 33286 GTCAATGTCTTCACAAAGATCTGCATA 33312 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || | |||||||||||| || || || |||||||||||| Sbjct 33313 CCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 33372 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | | ||||| | || || ||||| | ||||| | ||| ||||| || Sbjct 33373 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 33432 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||| || ||| ||| | || || || || | || || Sbjct 33433 ATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACC 33492 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || ||||| || |||||||| |||||| Sbjct 33493 TCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCATA 33540 >seq3 Length=31061273 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | |||||||||||| || || || ||||||||||| || | || | || Sbjct 12366387 AAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCTAATGTCCTGCCATCC 12366328 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| ||||| | |||| | ||| ||||| |||||| ||||| ||||| Sbjct 12366327 TCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCT 12366268 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| ||||||| ||||| | | || || || | ||| | ||| Sbjct 12366267 TGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAACCTCAAGGGTGACGGTC 12366208 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| ||||||||| Sbjct 12366207 TTTCCGGTGAGAGTCTTCACAAAGATTTGCATA 12366175 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || ||||| | | || | |||||||||||| || || || |||||||||||| Sbjct 12366860 TGCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 12366801 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| | ||||| | || || || || | ||||| | ||| ||||| | Sbjct 12366800 CCAAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGAG 12366741 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || ||||| || ||| ||| ||| | || || || || |||||| Sbjct 12366740 GAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAGCTTTCTA 12366681 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| || ||||| || || || |||||||| |||||| Sbjct 12366680 CCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCATA 12366631 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || ||||| ||||||||||| || | | | | || || Sbjct 12366156 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 12366097 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||| ||| || ||||| ||| || ||||| || || | Sbjct 12366096 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGATGGGATCCCTTCCTTATCTTGA 12366037 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||||||||| | | || || || | |||| ||| || Sbjct 12366036 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTAACGGTCTTG 12365977 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || | || ||||| |||||||| Sbjct 12365976 CCTGTAAGCGCCTTAACAAAGATTTGCAT 12365948 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || ||||| ||||| | | | | | ||||| | || Sbjct 12367290 TGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGC 12367231 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| | ||| ||||| ||||| ||||||||||| || ||| Sbjct 12367230 TTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTATCTTG 12367171 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || || || || | ||||| || |||||||| || || || || Sbjct 12367170 GTCTTCACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTTCCGGTA 12367111 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || ||||| |||||| Sbjct 12367110 AGAGTCTTCACGAAAATCTGCATA 12367087 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | |||||||||||| || || || |||||||||||| | ||| | ||| Sbjct 12366615 AAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCT 12366556 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | |||| | ||| ||||| ||||| || || ||||| Sbjct 12366555 TCCAGCTGCTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCT 12366496 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || || ||||| | || || || || ||||| ||| Sbjct 12366495 TGAATCTTGGCCTTAACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTAATCGTT 12366436 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || |||||||| |||||| Sbjct 12366435 TTGCCTGTAAGCGTCTTAACAAAAATCTGCATA 12366403 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | |||||| || || || || || |||||||| || ||| | || | || Sbjct 12367527 AAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 12367468 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || ||||| | ||||| | || || || ||| ||||| || || || Sbjct 12367467 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCC 12367408 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || | || || || || | ||||||| || ||||||||||| Sbjct 12367407 TGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATGGTC 12367348 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || ||||| ||||||||| Sbjct 12367347 TTTCCGGTCAGCGTCTTCACAAAGATTTGCATA 12367315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || |||||||| ||| ||| | | | ||||| || || Sbjct 8017645 TGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCCAACTGC 8017586 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | |||||| ||||| |||||||||||| ||||| || ||| Sbjct 8017585 TTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTTG 8017526 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | || || || || | || || || | ||| || || || ||||| Sbjct 8017525 GCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTT 8017466 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 8017465 AGGGTTTTCACGAAGATCTGCATCTTTG 8017438 >seq28674 Length=75340 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || || | ||| |||||||| || || ||||| || || || ||||| Sbjct 21042 CCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCA 20983 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| ||||| || || || | ||||| |||||||| || ||| Sbjct 20982 AGAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGA 20923 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || ||| ||||| ||| || | || || || || | ||| || Sbjct 20922 ATTCCTTCTTTATCTTGAATCTTTGC-CTTCACGTTGTCGATTGTGTCAGAAGATTCGAC 20864 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || |||||||| || || || ||||| || || |||||||| Sbjct 20863 TTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 20816 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| | |||||| || ||| | || | ||| |||||||| |||||||||||| | Sbjct 20748 CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCT 20689 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 | || |||||| || || | || ||||| ||| ||| || |||| ||| | Sbjct 20688 TATCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTA 20629 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| || || || ||||| || || || ||||| Sbjct 20628 TGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 20592 >seq4 Length=28907061 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||||| |||||||||||| || | | | |||| || Sbjct 27565207 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCGTCCTCC 27565148 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||| ||| || ||||| ||| || ||||| || || | Sbjct 27565147 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGA 27565088 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||||||||| | | || || || | || ||||| || Sbjct 27565087 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCCAGAGTGATGGTCTTG 27565028 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 27565027 CCAGTGAGGGTCTTAACGAAGATTTGCAT 27564999 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||| ||||| ||||| || ||||||||||| ||| || | | | ||||| | || Sbjct 27565429 TGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCGGCCATCTTCGAGCTG 27565371 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | ||| ||||| ||| ||||| |||||||| ||| || Sbjct 27565370 CTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTT 27565311 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || |||||||| | || || || | ||| || || || || || Sbjct 27565310 GGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCGGT 27565251 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 27565250 GAGGGTCTTAACAAATATTTGCATA 27565226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || |||||||||||| | ||| | ||||| | || Sbjct 27565886 ATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCGAGCTG 27565827 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | ||| || || ||||| || || ||||| || || Sbjct 27565826 CTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGTATCTT 27565767 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || || || | || || || || || || || ||||| || Sbjct 27565766 AGCCTTCACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTACCAGT 27565707 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| |||||||| |||||| Sbjct 27565706 AAGAGTTTTCACAAAAATCTGCATA 27565682 >seq1 Length=28142018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || || | || | || || || ||| Sbjct 1586207 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGT 1586266 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| | || || || ||| || ||||| || || ||||||| Sbjct 1586267 TTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTG 1586326 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || |||||||| | || || || ||||| ||||| ||||| ||| Sbjct 1586327 GCCTTCACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTTATGGTCTTACCAGTC 1586386 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| |||||| Sbjct 1586387 AAGGTCTTGACAAAAATCTGCATA 1586410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| || || || || |||||||| ||| | || ||||||| Sbjct 1587178 AACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTC 1587237 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || ||| | || | |||||| ||||| ||||||||||| ||||| Sbjct 1587238 CAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTG 1587297 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || | || ||||| || | || || || | ||| ||||| || Sbjct 1587298 GATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 1587357 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 1587358 TCCGGTGAGTGTTTTCACGAAGATTTGCAT 1587387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| | | || | ||||| ||||| || || || || |||||||| Sbjct 1586411 CCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 1586470 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| ||||||||||| || | ||||| | || || || ||| Sbjct 1586471 AGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 1586530 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||| ||| | || ||||| || | || || Sbjct 1586531 ATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACC 1586590 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| ||||| |||| ||| || ||||| || |||||| Sbjct 1586591 TCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCATA 1586638 >seq5139 Length=1344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || ||||| |||||||||||| || | | | | || || Sbjct 1305 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGCCCATCCTCC 1246 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||| ||| || ||||| ||| | ||||| || || | Sbjct 1245 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGTGGGTTCCCTTCCTTATCTTGA 1186 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||||||||| | | || || || | | ||||| || Sbjct 1185 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGCGATGGTCTTG 1126 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCA--TATTT---GAAAATAAA 15376 || || || || || || || ||||| | ||||| |||||||| Sbjct 1125 CCAGTGAGGGTCTTAACGAAGATTTGTATCTATTTATCCAAAATAAA 1079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362006826581991