Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9364 86.0 5e-12 >seq9364 Length=1264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || |||||||| || | || |||||||||||||||| || Sbjct 542 GTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTCCGCCCGTCCTCCAGCTGTTTTCCA 601 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | | |||||| ||| || | || || || || |||||| || Sbjct 602 GCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTGAATTTTGGCCTTA 661 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| | ||| ||| | |||||||| ||||| || | || Sbjct 662 ACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCTTACCAGTGAGGGTC 721 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| |||||||| Sbjct 722 TTGACAAAGATTTGCAT 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414375490683094