Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq28674 87.8 1e-12 >seq28674 Length=75340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 169/245 (69%), Gaps = 16/245 (7%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || || | ||||| | |||||||| | || |||||||| || ||||| Sbjct 21052 AATCTGCATTCCACCACGTAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATT 20993 Query 33193 GTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 ||||||| ||| ||||| || |||||||||||||| ||| || || |||| Sbjct 20992 ATAATCAG-CAA---GAGTTCTACCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTT 20937 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCG 33305 | || || | || || |||||||| || |||| ||| || || | | || | Sbjct 20936 GTTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTTGCC---TTCACGTTGTCGATTG 20880 Query 33306 TGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTT 33365 |||| | || || || || || || ||||| || || || ||||| ||||| |||| Sbjct 20879 TGTCAGAAGATTCGACTTCGAGTGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTT 20820 Query 33366 GCATG 33370 ||||| Sbjct 20819 GCATG 20815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318625882881798