Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq28626 100 2e-16 seq28674 96.9 2e-15 seq3 95.1 9e-15 seq1 95.1 9e-15 seq4 84.2 2e-11 seq28803 82.4 5e-11 >seq28626 Length=87040 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| || | |||||||||||||| |||||| || ||||||||||| Sbjct 42365 CCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGATATTATAATCCGCA 42424 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 42425 AGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 42484 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||||| |||||| | | | ||||| | | || || Sbjct 42485 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATCGGAGGATTCTACC 42544 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| ||||||| || ||||| || || |||||| Sbjct 42545 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 42592 >seq28674 Length=75340 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| ||||| |||||| || ||||||||||| | | |||| ||| Sbjct 21024 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCTTCC 20965 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| ||||||||||| ||||| ||||| || || |||| | |||||||||||| | Sbjct 20964 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 20905 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| || || | | | || || | | || || |||| || || ||||| Sbjct 20904 ATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTTCGAGTGTGATGGTTTTG 20845 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || |||| || || || || ||||||||| || Sbjct 20844 CCAGTTAGGGTTTTGACGAAGATTTGCATGCCG 20812 >seq3 Length=31061273 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || |||||| |||||| ||||| |||||||| || || |||| || | || Sbjct 12367290 TGAAGCGTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGC 12367231 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTTT 44037 ||||| ||||||||||||| ||||||||| | || | ||||||||| | ||| | | | Sbjct 12367230 TTTCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATACCTTCTTTGTCCTGTA--TCT 12367173 Query 44038 TTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGG 44096 | || || || | ||| ||| |||| ||| || || | ||||| || || |||| Sbjct 12367172 TGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTTCCGG 12367113 Query 44097 TTAAAGTCTTCACAAATATTTGCAT 44121 | | ||||||||| || || ||||| Sbjct 12367112 TAAGAGTCTTCACGAAAATCTGCAT 12367088 >seq1 Length=28142018 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || ||||| | | ||| | || || ||| ||| || || ||||| ||||| Sbjct 1586410 ACCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGC 1586469 Query 43954 TAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | || ||| ||||||||||| |||||||| ||||||| ||||| || | | Sbjct 1586470 -AAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGG 1586528 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| ||||| || || ||||| | ||| || |||| ||||| Sbjct 1586529 GAATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCA 1586588 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || |||||||| |||||||| |||||||| ||||| Sbjct 1586589 CCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCAT 1586637 >seq4 Length=28907061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| || || || ||||| ||| || |||| || | || ||||| ||||| Sbjct 27565417 TCTTTCTGGATGTTGTAATCAGCTAAGGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAA 27565358 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||||| ||||||||| | || | || ||||| ||| ||| || ||||| | Sbjct 27565357 ATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTG 27565298 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | |||||| || | || ||||| || ||||| | ||||| ||| Sbjct 27565297 TCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCGGTGAGGGTCTTAACA 27565238 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 27565237 AATATTTGCAT 27565227 >seq28803 Length=52646 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | | || | ||| || ||| || || || || || |||||| Sbjct 33312 ACCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 33371 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| || | || ||||| ||||| ||||||| ||||||||| | || Sbjct 33372 CAAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGG 33431 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || || ||| ||| || || || | ||| ||| |||| ||| || Sbjct 33432 GATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAAC 33491 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || | |||||||||||| || ||||| Sbjct 33492 CTCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 33539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354608749255548