Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 136 4e-27 seq1 136 4e-27 seq28674 129 5e-25 seq9364 123 2e-23 seq28803 122 8e-23 seq3 118 9e-22 seq28626 111 1e-19 seq28613 84.2 2e-11 >seq4 Length=28907061 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | ||| | ||| || || || || | ||||||||| || || || | Sbjct 27565669 CGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCCA 27565610 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| |||| || || || ||||||||||| |||||||||||||| Sbjct 27565609 TCTTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCTTCTTTA 27565550 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | | ||||||| || || |||| |||||| Sbjct 27565549 TCTTGTATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCAAGGGTGATG 27565490 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || || || |||||||||||||| Sbjct 27565489 GTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 27565455 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | |||||| ||||| || | ||| || || | || | | Sbjct 27566125 CGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCA 27566066 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || || || ||||||| || || ||||||||||| || || || || ||| Sbjct 27566065 TCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTG 27566006 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||||||||| ||| || || | || || || | || ||| Sbjct 27566005 TCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTACCTCCAATGTAATG 27565946 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| | ||| ||||||||||||||||| Sbjct 27565945 GTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 27565911 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| |||||| || || | ||| || ||||| ||||| Sbjct 27565879 GTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCGAGCTGCTTTCCA 27565820 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || ||||||||||| || ||||| || || ||||| | || || ||||| Sbjct 27565819 GCAAAAATCAACCTTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGTATCTTAGCCTTC 27565760 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | | ||||| | | || || || | || || || || |||||||||||| Sbjct 27565759 ACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTACCAGTAAGAGTT 27565700 Query 94991 TTCACAAAGATCTGCAT 95007 |||||||| |||||||| Sbjct 27565699 TTCACAAAAATCTGCAT 27565683 >seq1 Length=28142018 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | || || ||||| || | || |||||| || ||| | Sbjct 1586945 CGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCG 1587004 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||| ||| Sbjct 1587005 TCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTG 1587064 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||||| | || || |||| |||||| Sbjct 1587065 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATG 1587124 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || || ||||||||||| Sbjct 1587125 GTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCAT 1587159 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||| || Sbjct 1586776 ATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 1586835 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| | | | ||||||| | || || |||| || || Sbjct 1586836 GTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGAGTAAT 1586895 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||||||||| ||||| Sbjct 1586896 AGTCTTTCCGGTAAGGGTCTTCACAAAGATTTGCAT 1586931 Score = 102 bits (112), Expect = 7e-17 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || || ||||| |||| ||| | ||| | ||| || ||||| || | Sbjct 1586398 AAAAATCTGCATACCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGAT 1586457 Query 94828 GTTATAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || ||||| | || || || | ||| |||| ||||| || ||||||| || || Sbjct 1586458 ATTGTAATC-CGCA-AGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTC 1586515 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||||||||| || || | || || |||||||| | | | ||| Sbjct 1586516 TGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTG 1586575 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || ||||| || || || | ||| || ||||| |||||| Sbjct 1586576 TCTGAGCTCTCCACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGC 1586635 Query 95006 AT 95007 || Sbjct 1586636 AT 1586637 >seq28674 Length=75340 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||| || || || | |||||||| | ||| | ||| ||| Sbjct 21024 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCAGCAAGAGTTCTACCATCTTCC 20965 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| ||||||| |||| ||| ||||| |||||||| |||||||| || | | Sbjct 20964 AATTGCTTTCCTGCAAAGATCAATCGTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 20905 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| ||| | ||| ||||||| ||||| || | ||||||||||| Sbjct 20904 ATCTTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACTTCGAGTGTGATGGTTTTG 20845 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||| || ||||| ||||||| Sbjct 20844 CCAGTTAGGGTTTTGACGAAGATTTGCATGC 20814 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || ||||||||| | ||||| | | || || ||||| ||||| ||||| || Sbjct 20746 TCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTA 20687 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || |||||| | ||| ||||| | | || || || | || ||| Sbjct 20686 TCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATG 20627 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || |||||||| |||||||||||| Sbjct 20626 GTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 20591 >seq9364 Length=1264 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGG 94850 |||||| || | || | ||| ||||| || || | ||| ||||| ||| | || || Sbjct 295 TCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGCTAAG-GTCCTGC 353 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || ||||| ||||| |||| || || |||||||| ||||| || || || |||| Sbjct 354 CATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTT 413 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || |||||||| | | | ||||||| || || || | |||| Sbjct 414 TGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCAGAACTCTCCACCTCGAGGGTGA 473 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| ||||| ||||||||||| ||||| Sbjct 474 TGGTCTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 ||||| || | || || |||||||| | ||| |||||| || || || | |||| Sbjct 530 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGG-CA-AGGGTCCGCCCGTCCT 587 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||||||||| |||| || || | ||||| || || || || ||||| || || | Sbjct 588 CCAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCCGGTGGGATCCCTTCCTTATCTT 647 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||| || | | | || || | || || |||| || ||||| | Sbjct 648 GAATTTTGGCCTTAACATTGTCTATGGTATCGGAACTCTCAACTTCAAGAGTAATGGTCT 707 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || |||||||| ||||| Sbjct 708 TACCAGTGAGGGTCTTGACAAAGATTTGCAT 738 >seq28803 Length=52646 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| ||||| || | || | || | || |||||||| || | ||| |||||| | Sbjct 33313 CCTCCCCTCAACCGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 33372 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| || ||||| ||||| ||||||| || |||||||| ||||| || Sbjct 33373 AAAGTTCGCCCATCTTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGG 33432 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||| || ||||| || | | | |||||| | | || || Sbjct 33433 ATACCCTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATAGTGTCTGAGCTCTCAACC 33492 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || ||||||||||| |||||||| |||||||| Sbjct 33493 TCCAAAGTTATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 33539 Score = 122 bits (134), Expect = 8e-23 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| | | |||||| || | || | ||| ||||| || || | Sbjct 33528 AAAAATCTGCATACCTCCACGAAGTCGCAAGACAAGATGAAGAGTGGATTCTTTCTGGAT 33587 Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||| ||||| ||| | || || ||| || ||||| ||||| |||| || || |||| Sbjct 33588 GTTGTAATCAGCTAAG-GTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTT 33646 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||| || || || |||||||| | ||| || |||||||| | | | |||| Sbjct 33647 GCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGT 33706 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || |||| |||||||| ||||| || || || || ||||||||||||| Sbjct 33707 CAGAACTCTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCA 33766 Query 95007 T 95007 | Sbjct 33767 T 33767 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | || | |||||||||||| || | ||| || || | || | | Sbjct 32545 CGCAACACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCA 32604 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || || || ||||||| || || ||||||||||| || || ||||| ||| Sbjct 32605 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 32664 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||||||||| ||| || |||| || || || | || ||| Sbjct 32665 TCCTGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAAAGTAATG 32724 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||||||||||||||||| Sbjct 32725 GTCTTCCCTGTCAAGGTCTTCACAAAGATCTGCATGC 32761 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | |||||| ||||| || | ||| || || | || | | Sbjct 38758 CGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCA 38817 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || || || ||||||| || || ||||||||||| || || ||||| ||| Sbjct 38818 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTG 38877 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||||||||| ||| || |||| || || || | || ||| Sbjct 38878 TCCTGTATTTTTGCCTTGACATTATCGATTGTATCAGAACTTTCTACCTCCAATGTAATG 38937 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || | || ||||||||||||||||||| Sbjct 38938 GTCTTCCCTGTCAACGTCTTCACAAAGATCTGCATGC 38974 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 94782 CTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCA 94841 |||| ||||| || | || | || | || |||||||| || | ||||||||| || Sbjct 33086 CTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCCA 33145 Query 94842 TAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAA 94901 || || ||| || ||||| ||||| |||| || || |||||||| |||||||||| Sbjct 33146 AGGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAA 33205 Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 | || || ||||| | ||| || || || || | | | ||||| | | || || | Sbjct 33206 TGCCCTCCTTGTCCTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACCT 33265 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || ||||| || || || | || ||||||||||||||||| Sbjct 33266 CCAAAGTAATGGTCTTCCCTGTCAATGTCTTCACAAAGATCTGCAT 33311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || ||||||| || || ||||||||||| || || ||||| || Sbjct 8818 ATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTT 8759 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||||||||| || ||| || || | || || || | || || Sbjct 8758 GTCCTGTATTTTTGCCTTAACATTATCGATTGTATCTGAACTTTCTACCTCCAAAGTAAT 8699 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || | ||| ||||||||||||||||||| Sbjct 8698 GGTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCATGC 8661 >seq3 Length=31061273 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGG 94850 |||||| || | || | || |||||||| || | ||| ||||| ||| || || || Sbjct 12366391 TCGCAAGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCTAAT-GTCCTGC 12366333 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| ||||||||||| |||| || | |||||||| ||||| ||||||||||| | Sbjct 12366332 CATCCTCAAGCTGTTTTCCAGCAAAAATCAGCCTTTGCTGGTCTGGTGGAATACCTTCCT 12366273 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || ||||||| | | || || | || || |||| |||| Sbjct 12366272 TGTCTTGAATCTTGACCTTGACATTTTCTATCGTATCCGAACTCTCAACCTCAAGGGTGA 12366213 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || ||||| ||||||||||| ||||| Sbjct 12366212 CGGTCTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 12366176 Score = 118 bits (130), Expect = 9e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| ||||| || | || | || | || |||||||| || | ||| | Sbjct 12366866 TTTGCATGCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGT 12366807 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || || | ||| |||||||| |||||| |||| || || |||||||| | Sbjct 12366806 AATCGGCCAAGGTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGT 12366747 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||||||||| || ||||| | || || ||||| || | | | ||||| | | Sbjct 12366746 CTGGAGGAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCTGAGC 12366687 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || ||||| || || ||||| || || ||||| |||||||| Sbjct 12366686 TTTCTACCTCCAAAGTAATGGTCTTGCCTGTAAGCGTCTTAACAAAAATCTGCAT 12366632 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| |||| || | || | ||| | || || || || || | ||||| Sbjct 12367322 TTTGCATACCTCCCCTCAGACGAAGGACAAGGTGAAGCGTGGACTCTTTCTGAATGTTAT 12367263 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| || ||| | ||| || ||||| ||||| |||| || || |||||||| | Sbjct 12367262 AATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTTCCAGCAAATATCAACCTTTGCTGGT 12367203 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||||||||| | || || | ||| || | | | |||||| | | Sbjct 12367202 CTGGGGGAATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGC 12367143 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || || || ||||| |||||||| ||||| || |||||||| Sbjct 12367142 TCTCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 12367088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| ||||| || || | ||| || ||| | |||| | ||| |||| ||| Sbjct 8017646 GTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCTTCCAACTG 8017587 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| | ||||| | | |||||| || || ||||| ||||| ||||| | || || Sbjct 8017586 CTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATCTT 8017527 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || |||||| | ||| ||||| | || || || | || || || || || || Sbjct 8017526 GGCTTTGACGTTGTCGATTGTGTCTGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGT 8017467 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| ||||||||||| Sbjct 8017466 TAGGGTTTTCACGAAGATCTGCAT 8017443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || | |||||| ||||| || | ||| || || | ||| | | Sbjct 12367530 CGCAAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCA 12367471 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| || || || ||||||| || || ||||||||||| || || || || || Sbjct 12367470 TCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTA 12367411 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||||| ||| | | ||||| | || || || | || ||| Sbjct 12367410 TCCTGTATTTTTGCCTTCACGTTATCAATTGTGTCTGAACTTTCTACCTCCAAGGTAATG 12367351 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || || ||||||||||| ||||| Sbjct 12367350 GTCTTTCCGGTCAGCGTCTTCACAAAGATTTGCAT 12367316 >seq28626 Length=87040 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| || | ||| | | ||||| || | ||||| || || || | Sbjct 42352 AAAAATCTGCATTCCACCGCGCAACCTAAGAACCAAATGTAGCGTAGACTCTTTCTGGAT 42411 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| | ||| | ||| |||| || || || ||||||| |||| || Sbjct 42412 ATTATAATCCGCAAGAGTCCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTG 42471 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| |||||||| ||||| ||||| | ||||| || |||||| | ||| || || Sbjct 42472 CTGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTATC 42531 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || |||||||| || || || |||||||| ||||||||||| Sbjct 42532 GGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 42591 Query 95008 G 95008 | Sbjct 42592 G 42592 >seq28613 Length=6376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || ||||||||||| | ||||||||| | |||| | ||| ||| Sbjct 5583 ACCAAGTGAAGCGTTGATTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCC 5524 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || |||| || || || ||||| || ||||| |||||||| ||||| || Sbjct 5523 AGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTA 5465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448072372254360