Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 168 1e-37 seq2 156 7e-34 seq4 154 2e-33 seq38548 140 5e-29 seq38542 140 5e-29 >seq6 Length=22682783 Score = 168 bits (186), Expect = 1e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || ||||| || || |||||| ||||| | || || Sbjct 9974464 TCTTCGTGACAACATCCAAGGCATAACTAAGCCTGCAATTCGTCGTTTGGCTAGGCGAGG 9974405 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| | |||| ||||| | ||||| |||| | |||||||| Sbjct 9974404 TGGTGTCAAGAGAATCAGTGGTCTCATCTACGAAGAAACTCGTGGTGTTCTCAAGATCTT 9974345 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||||||| | |||||| |||||||||| | || ||||| Sbjct 9974344 TCTCGAGAACGTGATTCGTGATGCTGTTACCTATACTGAGCACGCTAGGAGGAAAACTGT 9974285 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| |||| ||||| ||||| | || || | | |||| |||||||| Sbjct 9974284 CACCGCCATGGATGTCGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTTGG 9974225 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 9974224 TGGTTGATTTT 9974214 Score = 141 bits (156), Expect = 1e-29 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || || || || || || || |||||| | || | | || Sbjct 10663951 TCTTCGTGATAACATCCAGGGCATAACAAAACCTGCAATTCGTCGTTTAGCCAGAAGAGG 10664010 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| ||| |||||||||| | ||||| |||| | |||||||| Sbjct 10664011 TGGTGTCAAGAGAATCAGTGGTTTGATCTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 10664070 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||||||| | ||| || |||||||||| | || || || Sbjct 10664071 TCTCGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAAACCGT 10664130 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| ||||| | || || | | |||| ||||| || Sbjct 10664131 TACTGCCATGGATGTCGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 10664190 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 10664191 TGGTTGATTTT 10664201 Score = 141 bits (156), Expect = 1e-29 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||||||| || || ||||| || || |||||| | ||| | | || Sbjct 10669432 TCTTCGTGATAACATCCAAGGCATAACTAAGCCTGCAATTCGTCGTTTAGCTAGAAGAGG 10669491 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| | |||||||||| | ||||| |||| | |||||||| Sbjct 10669492 TGGTGTCAAGAGAATCAGTGGTCTCATCTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 10669551 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||||||| | ||| || |||||||||| | || || || Sbjct 10669552 TCTCGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAAACCGT 10669611 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || ||||| ||||| | || || | | |||| ||||| || Sbjct 10669612 TACCGCTATGGATGTTGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 10669671 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 10669672 TGGTTGATTTT 10669682 Score = 138 bits (152), Expect = 2e-28 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || ||||| || || |||||| | || | | || Sbjct 10671711 TCTTCGTGACAACATCCAAGGCATAACTAAGCCTGCAATTCGTCGTTTAGCCAGAAGAGG 10671770 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| | |||||||||| | ||||| |||| | |||||||| Sbjct 10671771 TGGTGTCAAGAGAATCAGTGGTCTCATCTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 10671830 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||||||| | ||| || |||||||||| || || || || Sbjct 10671831 TCTCGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGCGGAAAACAGT 10671890 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| ||||| |||| | || || | | |||| ||||| || Sbjct 10671891 TACTGCCATGGATGTCGTTTATGCTCTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 10671950 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 10671951 TGGTTGATTTT 10671961 >seq2 Length=32560536 Score = 156 bits (172), Expect = 7e-34 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||||||||| |||||||| || ||||| || || |||||||| ||| | ||||| Sbjct 27400109 TCTTAGAGATAACATTCAAGGAATAACAAAGCCTGCAATTCGTCGTCTTGCTAGACGTGG 27400050 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || || || | |||||||| | ||| | |||| | |||||||| Sbjct 27400049 TGGTGTGAAGCGTATCAGCGGTTTAATTTATGAAGAAACTCGCGGTGTTCTCAAGATCTT 27399990 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| || || | ||||||| | |||||| ||||| ||| ||||||||||| Sbjct 27399989 TCTTGAGAATGTGATTCGTGATGCTGTTACCTATACTGAGCATGCTCGCCGTAAGACTGT 27399930 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || ||||| | || | ||||| | | |||||||||| || Sbjct 27399929 TACTGCCATGGATGTTGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTATGGTTTCGG 27399870 Query 16693 AAGTTA 16698 |||| Sbjct 27399869 CGGTTA 27399864 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||||||||| |||||||| || | | |||| | | || Sbjct 19437952 TCTTCGTGATAACATTCAAGGAATCACAAAGCCAGCAATTAGAAGATTGGCGAGAAGAGG 19437893 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| ||||||| || | ||| | || ||||||||||| Sbjct 19437892 TGGTGTGAAGAGAATCAGTGGTTTGATCTATGAGGAAACTCGAGGAGTGTTGAAGATCTT 19437833 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || | |||||| | ||||| |||||||| | | ||||| || Sbjct 19437832 CTTGGAGAATGTGATTCGTGATGCGGTTACGTATACTGAGCACGCGAGGAGAAAGACGGT 19437773 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| | || | ||||| | | | ||||||||||| Sbjct 19437772 TACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGTTTTGG 19437713 Score = 82.4 bits (90), Expect = 1e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || || || | |||||||| | ||||| |||| | |||||||| || Sbjct 27408779 GTGAAGCGTATCAGCGGTTTAATTTATGAAGAAACTCGTGGTGTTCTCAAGATCTTTCTT 27408720 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| | |||||| || || ||| ||||||||||| || Sbjct 27408719 GAGAATGTGATTCGTGATGCTGTTACCTATACTGAACATGCTCGCCGTAAGACTGTTACT 27408660 Query 16637 TCCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 27408659 GCCATGGATGTTGTTTATGC 27408640 >seq4 Length=28907061 Score = 154 bits (170), Expect = 2e-33 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| |||||||| || |||||||| || |||||||| |||||| | || Sbjct 27296732 CTTCGCGATAACATTCAAGGAATAACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGA 27296791 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| || ||| ||| |||||||||||| |||| || |||||||| || Sbjct 27296792 GGAGTGAAACGTATCAGTGGTTTGATCTATGAAGAGACACGTGGCGTGTTGAAGATATTT 27296851 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | ||||| || || |||| | |||||||| Sbjct 27296852 TTGGAGAATGTGATTCGTGATGCTGTTACTTATACTGAACATGCTAGGAGAAAGACTGTT 27296911 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | ||||| | | ||||||| ||||| Sbjct 27296912 ACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGT 27296971 Query 16694 AGTTA 16698 |||| Sbjct 27296972 GGTTA 27296976 >seq38548 Length=191562 Score = 140 bits (154), Expect = 5e-29 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | | ||| |||||||||| ||||| || || || || ||||| Sbjct 56537 CGCAAAGCGTCACAGGAAAGTTCTGAGAGATAACATTCAAGGTATAACTAAACCTGCTAT 56596 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || | |||||||| || |||||| | ||| ||| |||||||||| | Sbjct 56597 TCGTCGTCTTGCAAGACGTGGTGGTGTGAAGCGTATAAGTGGTTTGATCTATGAAGAAAC 56656 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||||| ||||| ||| ||||| | ||| ||| | ||||| || Sbjct 56657 ACGTGGCGTTCTCAAGATATTCCTTGAGAATGTTATTCGTGACGCTGTTACTTATACTGA 56716 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || || || || || | |||||| | || |||||| | ||| | ||||| Sbjct 56717 ACATGCTCGTCGCAAAACAGTTACTGCTATGGATGTTGTTTATGCACTCAAAAGGCAAGG 56776 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | ||||||||||||| |||| Sbjct 56777 AAGGACCCTTTATGGTTTTGGGGGTTA 56803 >seq38542 Length=195127 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||||||||||||| |||||||| || ||||| ||||||| | || Sbjct 54657 TCTTCGTGATAACATCCAAGGAATCACAAAGCCAGCAATTCGTCGATTGGCTCGAAGAGG 54716 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| |||||||||| | | | |||||||||||||| Sbjct 54717 TGGTGTTAAGAGAATCAGTGGTTTGATCTATGAAGAAACGAGAGGAGTTTTGAAGATCTT 54776 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || | |||||| | || || ||||| || | | |||||||| Sbjct 54777 CTTGGAGAATGTGATTCGTGATGCAGTTACTTACACAGAGCATGCAAGGAGGAAGACTGT 54836 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| | || | ||||| | | | ||||| || || Sbjct 54837 TACCGCCATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACCCTCTATGGATTCGG 54896 Query 16693 AAGTTAA 16699 | ||||| Sbjct 54897 AGGTTAA 54903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79039495397343