Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq28107 156 1e-33 seq29563 109 2e-19 seq6 105 2e-18 >seq28107 Length=123132 Score = 156 bits (172), Expect = 1e-33 Identities = 155/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGG 19732 || |||||| |||| || | |||| ||| |||| || ||||| | | |||||| | || Sbjct 14820 GTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGT-TTTCTTGATCTACCCAATAGG 14878 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 || || || ||| |||||||||||||| || |||||||||||||| ||||||||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 ||||| || || || || ||||| |||||||||||||| ||||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 19853 CGTATTCGGTGGATCTCT 19870 |||||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq29563 Length=4854 Score = 109 bits (120), Expect = 2e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19723 ACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTA 19782 ||||| |||| || || || ||| |||||||||||||| || ||||| |||||||| | Sbjct 4284 ACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCA 4343 Query 19783 ACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCG 19842 |||||||| | ||||| || | || || ||||| ||||||||||| || |||||| | Sbjct 4344 ACTTTATGATTGTATTTCAGGTTGAGCATAATATTCTTATGCATCCATTTCACATGTTAT 4403 Query 19843 GTGTTGCT 19850 |||| ||| Sbjct 4404 GTGTCGCT 4411 >seq6 Length=22682783 Score = 105 bits (116), Expect = 2e-18 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 19337 GTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTT 19396 |||| || | | ||||| ||| |||| | | || ||| || ||||| || | || Sbjct 2047924 GTTTTGAATTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCACTTT 2047983 Query 19397 TATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAAT 19456 || || || || |||||||| ||||| | |||||| | ||||| || || || | Sbjct 2047984 CATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTTTCTGGATCTCTACT 2048041 Query 19457 GTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCA 19516 |||||||||||||| |||| ||| || | | || | || || || || |||| Sbjct 2048042 TTACGGAAACAATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTGCA 2048101 Query 19517 CTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATA 19576 |||||| || || |||||||| | | | ||||||| |||||||||||||||||| || Sbjct 2048102 CTTTTACCCAATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCTTA 2048161 Score = 91.5 bits (100), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 19337 GTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTT 19396 |||| || | | ||||| ||| |||| | | || ||| || ||||| |||| || Sbjct 2115435 GTTTTGAATTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTT 2115376 Query 19397 TATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAAT 19456 || || || || |||||||| ||||| | |||||| | ||||| || || || | Sbjct 2115375 CATTGCTGCCCCTTTAGTAGATATTGATGG--TTCGTGAGTCTGTTTCTGGATCTCTACT 2115318 Query 19457 GTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGC----TCCAATGCAATAGGAC 19512 |||||||||||||| |||| ||| || | |||| ||| || || || || Sbjct 2115317 TTACGGAAACAATATAATTTTTGGTGCCATTATTCCTAGCTACTTCTGCGGCTATCGGTT 2115258 Query 19513 TGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACA 19563 |||||||||| ||||| |||||||| | || | ||||| |||||||| Sbjct 2115257 TGCACTTTTACCCGATATGGGAAGCTGCATCTGTTGATGA---GTTATACA 2115210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144374618006556