Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq6 158 2e-33 seq2 125 1e-23 >seq6 Length=22682783 Score = 158 bits (174), Expect = 2e-33 Identities = 257/363 (71%), Gaps = 14/363 (4%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 || ||||||||||| || | ||||| || || || |||||||| || ||| || Sbjct 16291256 AAGCCTGAGTATGTCATTGTAGCTGCAGCCAAAGTTGGTGGTATCCATGCCAACAACACT 16291197 Query 194644 TATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTG 194701 ||||| || |||||||| |||| ||| || || ||||| ||||| |||||| ||| Sbjct 16291196 TATCCAGCTGATTTCATTGCTAT--CAACCTCCAAATCCAGACCAATGTCATTGATTCTG 16291139 Query 194702 CATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 | |||||||| || | |||||| || |||||| | ||||| |||||||| || ||||| | Sbjct 16291138 CTTATCGTAACGGTGCTAAGAAGCTTTTGTTTTTGGGTTCTTCTTGCATTTACCCTAAAT 16291079 Query 194762 TTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT- 194820 || || ||| || | || ||| || ||| || | ||||| || | | ||| Sbjct 16291078 TTGCACCCCAACCGATCCCTGAAGATGCTTTGCTTACTGGCCCTTTAGAGCCAACAAATG 16291019 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---TCAG 194877 | || ||||||||||| ||||| || || || | ||||| ||||| || | ||| Sbjct 16291018 AATG-GTATGCAATTGCCAAGATTGCCGGGATCAAAATGTGCCAAGCTTACAGAATTCAA 16290960 Query 194878 CAGTA-TGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936 || | ||| ||||||| ||| ||||| || || |||||||||| ||||| || Sbjct 16290959 CACAAGTGG----GATGCAATTTCAGGGATGCCGACCAACTTATACGGACCAAATGACAA 16290904 Query 194937 TTT 194939 ||| Sbjct 16290903 TTT 16290901 >seq2 Length=32560536 Score = 125 bits (138), Expect = 1e-23 Identities = 224/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 193833 CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC-AAAGTTGTA 193891 |||| ||| ||||| || || |||||||| || || ||||| | | | ||||| | Sbjct 12171750 CCACAATCTGAAACGACGCCGTTTCATCCTCGTTCACCTTACGCAGCTTCGAAAGTCGC- 12171808 Query 193892 TGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTAT 193951 || ||||| || |||||| ||||| | |||||| | |||| || || || Sbjct 12171809 TGCGCATTGGTACACTGTGAATTACCGTGAAGCGTATGGAATTTTCGCTTGTAACGGAAT 12171868 Query 193952 TCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACA 194011 ||| |||||||| ||||| || | |||||||||| ||||| || | || ||||| | Sbjct 12171869 TCTGTTCAATCATGAATCACCTCGCAGAGGTGAGAATTTTGTGACAAGAAAAATTACTCG 12171928 Query 194012 AGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTA-ATG 194070 | | | || ||| | || ||||||| | || | |||||| || |||| | | Sbjct 12171929 TGCTGTTGGTAGAATCAAGATCGGGTTACAGAGTAAGCTGTTTCTTGGAAA-CTTACAAG 12171987 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 || || ||||||||| || ||||||||||||||||||||||| ||| | |||| Sbjct 12171988 CTTCAAGAGATTGGGGATTTGCTGGTGATTATGTTGAAGCGATGTGGTTGATGCTTCAAC 12172047 Query 194131 AGGATGAACCCGATGATTATGT 194152 | || || | ||||||||||| Sbjct 12172048 AAGAGAAAGCTGATGATTATGT 12172069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807161002023560