Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq28107 116 4e-21 >seq1 Length=28142018 Score = 122 bits (134), Expect = 1e-22 Identities = 208/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 171891 GGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCA 171950 ||||||||| ||| || || || || || |||||||| || ||||| | ||| || Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 171951 TATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGT 172010 ||| | || || ||||| |||||||| ||||| || || |||| | || | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 172011 CATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAA 172070 ||| | | ||||| || ||||| ||| | ||||| | |||| || | |||| |||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 172071 TTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 |||||||| | |||| ||||| || | || || | || ||| | |||||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 172131 CTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTC 172190 | | || ||||| |||| || |||| | || ||||| || ||| | ||||| Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAATTGCGGCCTTATAATGCAATCACATTC 23237800 Query 172191 TC 172192 || Sbjct 23237801 TC 23237802 >seq28107 Length=123132 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171049 TGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGG 171108 ||| ||||| ||||| || || | || || ||||||| ||| | | || ||| | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 171109 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTT 171168 |||||| || || ||||||||||| ||||| ||||| ||||| |||||||| ||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 171169 CGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGG 171228 || || || || || || || || || ||||| || || | ||| ||||||||| || Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 171229 TATGTTCGGTGG 171240 | | ||||| || Sbjct 14999 TGTATTCGGCGG 15010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569990430413640